
In the last years, cryogenic-electron microscopy (cryo-EM) underwent the most impressive improvement compared to other techniques used in structural biology, such as X-ray crystallography and NMR. Electron microscopy was invented nearly one century ago but, up to the beginning of the last decades, the 3D maps produced through this technique were poorly detailed, justifying the term “blobbology” to appeal to cryo-EM. Recently, thanks to a new generation of microscopes and detectors, more efficient algorithms, and easier access to computational power, single particles cryo-EM can routinely produce 3D structures at resolutions comparable to those obtained with X-ray crystallography. However, unlike X-ray crystallography, which needs crystallized proteins, cryo-EM exploits purified samples in solution, allowing the study of proteins and protein complexes that are hard or even impossible to crystallize. For these reasons, single-particle cryo-EM is often the first choice of structural biologists today. Nevertheless, before starting a cryo-EM experiment, many drawbacks and limitations must be considered. Moreover, in practice, the process between the purified sample and the final structure could be trickier than initially expected. Based on these observations, this review aims to offer an overview of the principal technical aspects and setups to be considered while planning and performing a cryo-EM experiment.
Citation: Vittoria Raimondi, Alessandro Grinzato. A basic introduction to single particles cryo-electron microscopy[J]. AIMS Biophysics, 2022, 9(1): 5-20. doi: 10.3934/biophy.2022002
[1] | Wedad Albalawi, Muhammad Imran Liaqat, Kottakkaran Sooppy Nisar, Abdel-Haleem Abdel-Aty . Qualitative study of Caputo Erdélyi-Kober stochastic fractional delay differential equations. AIMS Mathematics, 2025, 10(4): 8277-8305. doi: 10.3934/math.2025381 |
[2] | Wei Zhang, Jifeng Zhang, Jinbo Ni . New Lyapunov-type inequalities for fractional multi-point boundary value problems involving Hilfer-Katugampola fractional derivative. AIMS Mathematics, 2022, 7(1): 1074-1094. doi: 10.3934/math.2022064 |
[3] | Donny Passary, Sotiris K. Ntouyas, Jessada Tariboon . Hilfer fractional quantum system with Riemann-Liouville fractional derivatives and integrals in boundary conditions. AIMS Mathematics, 2024, 9(1): 218-239. doi: 10.3934/math.2024013 |
[4] | Karim Guida, Lahcen Ibnelazyz, Khalid Hilal, Said Melliani . Existence and uniqueness results for sequential ψ-Hilfer fractional pantograph differential equations with mixed nonlocal boundary conditions. AIMS Mathematics, 2021, 6(8): 8239-8255. doi: 10.3934/math.2021477 |
[5] | Murugesan Manigandan, R. Meganathan, R. Sathiya Shanthi, Mohamed Rhaima . Existence and analysis of Hilfer-Hadamard fractional differential equations in RLC circuit models. AIMS Mathematics, 2024, 9(10): 28741-28764. doi: 10.3934/math.20241394 |
[6] | Sunisa Theswan, Sotiris K. Ntouyas, Jessada Tariboon . Coupled systems of ψ-Hilfer generalized proportional fractional nonlocal mixed boundary value problems. AIMS Mathematics, 2023, 8(9): 22009-22036. doi: 10.3934/math.20231122 |
[7] | Ahmed Alsaedi, Bashir Ahmad, Afrah Assolami, Sotiris K. Ntouyas . On a nonlinear coupled system of differential equations involving Hilfer fractional derivative and Riemann-Liouville mixed operators with nonlocal integro-multi-point boundary conditions. AIMS Mathematics, 2022, 7(7): 12718-12741. doi: 10.3934/math.2022704 |
[8] | Weerawat Sudsutad, Chatthai Thaiprayoon, Sotiris K. Ntouyas . Existence and stability results for ψ-Hilfer fractional integro-differential equation with mixed nonlocal boundary conditions. AIMS Mathematics, 2021, 6(4): 4119-4141. doi: 10.3934/math.2021244 |
[9] | Weerawat Sudsutad, Jutarat Kongson, Chatthai Thaiprayoon, Nantapat Jarasthitikulchai, Marisa Kaewsuwan . A generalized Gronwall inequality via ψ-Hilfer proportional fractional operators and its applications to nonlocal Cauchy-type system. AIMS Mathematics, 2024, 9(9): 24443-24479. doi: 10.3934/math.20241191 |
[10] | Muhammad Imran Liaqat, Fahim Ud Din, Wedad Albalawi, Kottakkaran Sooppy Nisar, Abdel-Haleem Abdel-Aty . Analysis of stochastic delay differential equations in the framework of conformable fractional derivatives. AIMS Mathematics, 2024, 9(5): 11194-11211. doi: 10.3934/math.2024549 |
In the last years, cryogenic-electron microscopy (cryo-EM) underwent the most impressive improvement compared to other techniques used in structural biology, such as X-ray crystallography and NMR. Electron microscopy was invented nearly one century ago but, up to the beginning of the last decades, the 3D maps produced through this technique were poorly detailed, justifying the term “blobbology” to appeal to cryo-EM. Recently, thanks to a new generation of microscopes and detectors, more efficient algorithms, and easier access to computational power, single particles cryo-EM can routinely produce 3D structures at resolutions comparable to those obtained with X-ray crystallography. However, unlike X-ray crystallography, which needs crystallized proteins, cryo-EM exploits purified samples in solution, allowing the study of proteins and protein complexes that are hard or even impossible to crystallize. For these reasons, single-particle cryo-EM is often the first choice of structural biologists today. Nevertheless, before starting a cryo-EM experiment, many drawbacks and limitations must be considered. Moreover, in practice, the process between the purified sample and the final structure could be trickier than initially expected. Based on these observations, this review aims to offer an overview of the principal technical aspects and setups to be considered while planning and performing a cryo-EM experiment.
Numerous fractional operators are discussed in the literature [1,2,3], with the Caputo and Riemann-Liouville derivatives being the most significant and widely used [4,5,6]. In 2000, Hilfer [7] generalized the Riemann-Liouville derivative, introducing what is now referred to as the Hilfer fractional derivative (HFrD).
In literature, various authors used HFrD in their research work with fractional differential and integro-differential models; for example, Raghavan et al. [8] found solutions of the fractional differential equations (FrDEs) with HFrD applying the Laplace transform. Li et al. [9] developed results on the existence and uniqueness and also developed solutions for FrDEs by HFrD. Zhu et al. [10] extracted the solutions of fractional integro-differential models with HFrD. Bedi et al. [11] developed results of the existence and uniqueness of solutions for Hilfer FrDEs. Kasinathan et al. [12] developed results related to mild solutions for FrDEs. Lv and Yang [13] established results for the existence and uniqueness of mild solutions for stochastic models applying semigroup theory. Jin et al. [14] researched the existence and uniqueness of mild solutions to the diffusion model. Karthikeyan et al. [15] discussed results about the controllability of delayed FrDEs. Hegade and Bhalekar [16] developed results of stability for FrDEs. For more studies related to work with HFrD, see [17,18].
In recent years, many scholars have actively worked on various topics related to different classes of fractional stochastic differential equations (FSDEs). In [19], Batiha et al. proposed an innovative approach for solving FSDEs. They obtained approximate solutions for these equations and compared the results with solutions obtained by other methods. Chen et al. [20] established the existence and uniqueness of solutions to FSDEs and presented results related to stability. The authors also found solutions using the Euler-Maruyama technique for FSDEs. Moualkia and Xu [21] undertook a theoretical analysis of variable-order FSDEs. They determined approximate solutions for these equations and assessed their accuracy by comparing them with solutions from alternative methods. In [22], Ali et al. investigated the coupled system of FSDEs regarding the existence and uniqueness of solutions and stability and found solutions. Li et al. carried out a stability investigation of a system of FSDEs in [23]. The research analyzes the interaction between fractional calculus, stochastic processes, and time delays to provide a better understanding of system stability. It sheds light on the effective solution of these equations via several numerical methods. Moreover, the paper examined various types of stability in FSDEs. Albalawi et al. [24] conducted existence and uniqueness of solution and stability analysis for FSDEs with conformable derivatives. In [25], Doan et al. established the convergence of the Euler-Maruyama approach for FSDEs, found solutions using this technique, and presented stability results. In [26], Umamaheswari et al. discussed the existence and uniqueness of solutions using the Picard scheme for FSDEs with Lévy noise. In [27], Li et al. studied Hilfer FSDEs with delay concerning the existence and uniqueness of solutions using the Picard method. Moreover, they investigated finite-time stability using various inequalities. For further information on FSDEs, refer to [28,29,30,31,32].
Stochastic fractional delay differential equations (SFDDEs) are a mathematical model that includes fractional derivatives to take into account memory effects, delays in the display of time layer interactions, and stochastic processes for recording randomness or noise. These equations are particularly suitable for systems where past conditions, delay effects, and random variations have a significant impact on dynamics. SFDDEs find applications in various real-life scenarios, such as modeling biological systems with delayed feedback and environmental noise (e.g., population dynamics), engineering systems with memory and delays (e.g., control systems in robotics), finance (e.g., asset pricing with time-lagged market responses), and physics (e.g., viscoelastic materials with delayed stress-strain relationships). By integrating these complex factors, SFDDEs provide a robust framework for analyzing and predicting the behavior of time-dependent, uncertain systems.
The average principle is a valuable way to analyze various systems. Focusing on averaged equations instead of the original complex time-dependent system provides an effective way to simplify the analysis and reduce complexity. The effectiveness of the average principle depends on the identification of conditions in which the system averaged in a particular context corresponds to the original system. Various authors have presented results on the average principle from different perspectives, such as Zou et al. [33], who established the average principle for FSDEs with impulses. Zou and Luo [34] established a novel result regarding the average principle for SFDDEs with the Caputo operator. The authors [35] established a result on the average principle with the Caputo derivative for neutral FSDEs. Mao et al. [36] established averaging principle results for stochastic delay differential equations with jumps. Xu et al. [37] also worked to prove an averaging principle theorem for FSDEs. Guo et al. [38] studied the averaging principle for stochastic differential equations under a general averaging condition, which is weaker than the traditional case. In [39,40], the authors proved the averaging principle for impulsive FSDEs. Ahmed and Zhu [41] presented results regarding the averaging principle for Hilfer FSDEs with Poisson jumps. Xu et al. [42] presented an averaging principle for Caputo FSDEs driven by Brownian motion in the mean square sense. Jing and Li [43] worked on the averaging principle for backward stochastic differential equations. Djaouti et al. [44] presented some generalizations of the averaging principle for neutral FSDEs. Mouy et al. [45] also proved the averaging principle for Caputo-Hadamard FSDEs with a pantograph term. Liu et al. [46] presented results for Caputo FSDEs with Brownian motion and Lévy noise [47]. Yang et al. [48] presented results for FSDEs with Poisson jumps regarding the averaging principle.
Motivated by the above discussion, this paper presents significant findings on the existence and uniqueness of solutions, continuous dependence (Con-D), regularity, and average principle for Hilfer SFDDEs of the pth moment. The pth moment is a crucial tool for studying stochastic systems, helping assess the system's behavior and stability by providing a measure of its response over time. The pth moment can be applied to study the behavior of a stochastic system by analyzing its expected value. Moreover, the pth moment is an essential tool in probability analysis, offering a convenient framework for investigating and verifying the stability of stochastic systems.
This research study uses the contraction mapping principle to determine the existence and uniqueness results of the Hilfer SFDDES solution. Next, we present the Con-D results by assuming that the coefficients correspond to the global Lipschitz condition. Additionally, various inequalities are used to describe regularity and determine average principle results. Finally, examples and graphic illustrations are included to support the results derived from this study.
Remark 1.1. By proving the outcomes of the theoretical analysis regarding well-posedness, regularity, and average principle, we conclude that these results can be generalized to SFDDEs with the Hadamard fractional operator.
Remark 1.2. Unlike traditional fractional models, SFDDEs with HFrD present a fundamental challenge due to the interaction of memory, randomness, and time delay effects. These complexities make it even more difficult to derive analytical or approximate solutions and ensure stability. Furthermore, the relationship between HFrD and probabilistic properties requires careful treatment of functional spaces, noise structures, and solution methods.
Listed below are the main contributions of our study:
(1) This research work establishes results on the well-posedness, regularity, and average principle for SFDDEs concerning HFrD.
(2) Most of the findings related to existence, uniqueness, and average principle for FSDEs have been established in the mean-square sense; however, we obtained these results using the pth moment. Consequently, our study extended the results on well-posedness and average principle for SFDDEs to the case where p=2.
(3) We provide several numerical examples along with their graphical representations to verify the accuracy and reliability of our theoretical findings.
(4) We provide results for FSDEs with a delay term.
In this research, we study the following SFDDEs driven by Brownian motions:
{Dϑ,a0+ϖ(c)=f(c,ϖ(c),ϖ(c−s))+g(c,ϖ(c),ϖ(c−s))dw(c)dc,ϖ(c)=σ(c),−s≤c≤0,I(1−ϑ)(1−a)0+ϖ(0)=σ′, | (1.1) |
where s∈R+ is the delay time, σ(c) is the history function for all c∈[−s,0], and Dϑ,a0+ represents HFrD with orders 0≤ϑ≤1, 12<a<1. The f:[0,M]×Rm×Rm→Rm and g:[0,M]×Rm×Rm→Rm×b are the m-dimensional measurable functions. The stochastic process (wc)c∈[0,∞) follows a standard Brownian trajectory within the b-dimensional complete probability space (Ω,F,P). σ:[−s,0]→Rm is a continuous function. Assume that the norm of Rm is ‖⋅‖ and E‖σ(c)‖p<∞. The operator I(1−ϑ)(1−a)0+ is the Riemann-Liouville fractional integral operator.
The structure of the paper is as follows: The next section, Preliminary, discusses definitions, a lemma, and some assumptions. Section 3 presents the main results regarding Hilfer SFDDEs. Section 4 provides results related to average principle. Then, we present examples to illustrate our established theoretical results in Section 5. Section 6 contains the conclusion, and we discuss future directions.
First, we discuss the most important part of the paper, which serves as the foundation of our established results.
Definition 2.1. [49] Considering a function ϖ(c), the fractional integral operator of order a can be expressed as
Iaϖ(c)=1Γ(a)∫c0ϖ(φ)(c−φ)1−adφ,c>0. |
Definition 2.2 [50] The HFrD of order 0≤ϑ≤1 and 0<a<1 is given as follows:
Dϑ,a0+ϖ(c)=Iϑ(1−a)0+ddcI(1−ϑ)(1−a)0+ϖ(c), |
here, D=ddc.
Lemma 2.1. [50] When a>12 and c>0, we have
ηΓ(2a−1)∫c0(c−φ)2a−2E2a−1(ηφ2a−1)dφ≤E2a−1(ηφ2a−1). |
Definition 2.3. For p≥2 and c∈[0,∞), assume Apc=Lp(Ω,F,P) consists of all Fcth measurable with pth integrable ϖ=(ϖ1,ϖ2,⋯,ϖm)T:Ω→Rm as
‖ϖ‖p=(m∑ȷ=1E(|ϖȷ|p))1p. |
The ϖ(c):[0,M]→Lp(Ω,F,P) is an F−adapted process when ϖ(c)∈Apc and c≥0. For σ′∈Ap0, the ϖ(c) is a solution of Eq (1.1) if
ϖ(c)=σc(ϑ−1)(1−a)Γ(ϑ(1−a)+a)+1Γ(a)∫c0(c−φ)a−1f(φ,ϖ(φ),ϖ(φ−s))dφ+1Γ(a)∫c0(c−φ)a−1g(φ,ϖ(φ),ϖ(φ−s))dw(φ). | (2.1) |
For f and g, assume the following:
● (H1) When ∀ℓ1,ℓ2,ζ1,ζ2∈Rm, there are U1 and U2 such as
‖f(c,ℓ1,ℓ2)−f(c,ζ1,ζ2)‖p≤U1(‖ℓ1−ζ1‖p+‖ℓ2−ζ2‖p). |
‖g(c,ℓ1,ℓ2)−g(c,ζ1,ζ2)‖p≤U2(‖ℓ1−ζ1‖p+‖ℓ2−ζ2‖p). |
● (H2) For f(c,0,0) and g(c,0,0), we have
esssupc∈[0,M]‖f(c,0,0)‖p<ψ,esssupc∈[0,M]‖g(c,0,0)‖p<ψ. |
Now, assume the following:
● (H3) When ∀ℓ1,ℓ2,ζ1,ζ2,ℓ,ζ∈Rm, c∈[0,M], there is U3>0 such as
‖f(c,ℓ1,ℓ2)−f(c,ζ1,ζ2)‖∨‖g(c,ℓ1,ℓ2)−g(c,ζ1,ζ2)‖≤U3(‖ℓ1−ζ1‖+‖ℓ2−ζ2‖). |
● (H4) For f and g in system Eq (1.1), for ℓ,ζ∈Rm, and c∈[0,M], we can find a constant U4>0 such that it satisfies the following:
‖f(c,ℓ,ζ)‖∨‖g(c,ℓ,ζ)‖≤U4(1+‖ℓ‖+‖ζ‖). |
● (H5) There exist functions ˜f and ˜g, along with positive bounded functions ℵ1(M1) and ℵ2(M1) defined for M1∈[0,M], such that for all c∈[0,M], ℓ,ζ∈Rm, and p≥2, the following holds:
1M1∫M10‖f(c,ℓ,ζ)−˜f(ℓ,ζ)‖pdc≤ℵ1(M1)(1+‖ℓ‖p+‖ζ‖p), |
1M1∫M10‖g(c,ℓ,ζ)−˜g(ℓ,ζ)‖pdc≤ℵ2(M1)(1+‖ℓ‖p+‖ζ‖p), |
where limM1→∞ℵ1(M1)=0, limM1→∞ℵ2(M1)=0 and ℵ1(M1), ℵ2(M1) are positively bound functions.
This section establishes the well-posedness and regularity of the solutions to SFDDEs.
First, we present the important results regarding well-posedness for SFDDEs.
We have ℏσ:Hp(0,M)→Hp(0,M) with ℏσ(ϖ(0))=σ′. Then,
ℏσ(ϖ(c))=σ′c(ϑ−1)(1−a)Γ(ϑ(1−a)+a)+1Γ(a)∫c0(c−φ)a−1f(φ,ϖ(φ),ϖ(φ−s))dφ+1Γ(a)∫c0(c−φ)a−1g(φ,ϖ(φ),ϖ(φ−s))dw(φ). | (3.1) |
The main tool for establishing the key results is as follows:
‖ϖ1+ϖ2‖pp≤2p−1(‖ϖ1‖pp+(‖ϖ2‖pp),∀ϖ1,ϖ2∈Rm. | (3.2) |
Lemma 3.1. Assume that (H1) and (H2) hold; then ℏσ is well-defined.
Proof. For ϖ(c)∈Hp[0,M] and c∈[0,M], the following results are derived using Eqs (3.1) and (3.2):
‖ℏσ(ϖ(c))‖pp≤2p−1‖σc(ϑ−1)(1−a)Γ(ϑ(1−a)+a)‖pp+22p−2Γp(a)‖∫c0(c−φ)a−1f(φ,ϖ(φ),ϖ(φ−s))dφ‖pp+22p−2Γp(a)‖∫c0(c−φ)a−1g(φ,ϖ(φ),ϖ(φ−s))dw(φ)‖pp. | (3.3) |
By Hölder's inequality, we have
‖∫c0(c−φ)a−1f(φ,ϖ(φ),ϖ(φ−s))dφ‖pp≤m∑ȷ=1E(∫c0(c−φ)a−1|fı(φ,ϖ(φ),ϖ(φ−s))|dφ)p≤m∑ȷ=1E((∫c0(c−φ)(a−1)p(p−1)dφ)p−1∫c0|fı(φ,ϖ(φ),ϖ(φ−s))|pdφ)≤Map−1(p−1ap−1)p−1∫c0‖f(φ,ϖ(φ),ϖ(φ−s))‖ppdφ. | (3.4) |
From (H1), we obtain
‖f(φ,ϖ(φ),ϖ(φ−s))‖pp≤2p−1(‖f(φ,ϖ(φ),ϖ(φ−s))−f(φ,0,0)‖pp+‖f(φ,0,0)‖pp)≤2p−1(2p−1Up1(‖ϖ(φ)‖pp+‖ϖ(φ−s)‖pp)+‖f(φ,0,0)‖pp). | (3.5) |
Accordingly, we obtain
∫c0‖f(φ,ϖ(φ),ϖ(φ−s))‖ppdφ≤2p−1Up1((esssupφ∈[0,M]‖ϖ(φ)‖p)p+(esssupφ∈[0,M]‖ϖ(φ−s)‖p)p)∫c01dφ+2p−1‖f(φ,0,0)‖pp∫c01dφ≤2p−1MUp1(‖ϖ(φ)‖pHp+‖ϖ(φ−s)‖pHp)+2p−1‖f(φ,0,0)‖pp∫c01dφ. | (3.6) |
By Eqs (3.4) and (3.6), we get the following:
‖∫c0(c−φ)a−1f(φ,ϖ(φ),ϖ(φ−s))dφ‖pp≤Map−1(p−1ap−1)p−12p−1(Up1M(‖ϖ(φ)‖pHp+‖ϖ(φ−s)‖pHp)+∫c0‖f(φ,0,0)‖ppdφ). | (3.7) |
By (H2), we obtain
‖∫c0(c−φ)a−1f(φ,ϖ(φ),ϖ(φ−s))dφ‖pp≤Map−1(p−1ap−1)p−12p−1(Up1M(‖ϖ(φ)‖pHp+‖ϖ(φ−s)‖pHp)+Mψp). | (3.8) |
By Burkholder-Davis-Gundy inequality and Hölder's inequality, we obtain
‖∫c0(c−φ)a−1g(φ,ϖ(φ),ϖ(φ−s))dw(φ)‖pp=m∑ȷ=1E|∫c0(c−φ)a−1(gı(φ,ϖ(φ),ϖ(φ−s))dw(φ)|p≤m∑ȷ=1CpE|∫c0(c−φ)2a−2|gı(φ,ϖ(φ),ϖ(φ−s))|2dφ|p2≤m∑ȷ=1CpE∫c0(c−φ)2a−2|gı(φ,ϖ(φ),ϖ(φ−s))|pdφ(∫c0(c−φ)2a−2dφ)p−22dφ≤Cp(M2a−12a−1)p−22∫c0(c−φ)2a−2‖g(φ,ϖ(φ,ϖ(φ−s))‖ppdφ. | (3.9) |
By utilizing (H1) and (H2), we obtain
‖g(φ,ϖ(φ),ϖ(φ−s))‖pp≤2p−1Up2(‖ϖ(φ)‖pp+‖ϖ(φ−s)‖pp)+2p−1‖g(φ,0,0)‖pp≤2p−1Up2(‖ϖ(φ)‖pp+‖ϖ(φ−s)‖pp)+2p−1ψp. | (3.10) |
So, we get
∫c0(c−φ)2a−2‖g(φ,ϖ(φ),ϖ(φ−s))‖ppdφ≤2p−1Up2∫c0(c−φ)2a−2((esssupφ∈[0,M]‖ϖ(φ)‖p)p+(esssupφ∈[0,M]‖ϖ(φ−s)‖p)p)dφ+2p−1ψp∫c0(c−φ)2a−2dφ≤2p−1M(2a−1)2a−1(Up2(‖ϖ(φ)‖pHp+‖ϖ(φ−s)‖pHp)+ψp). | (3.11) |
So, from above, we have
∫c0(c−φ)2a−2‖g(φ,ϖ(φ),ϖ(φ−s))‖ppdφ≤2p−1M2a−12a−1(Up2(‖ϖ(φ)‖pHp+‖ϖ(φ−s)‖pHp)+ψp). | (3.12) |
By using Eq (3.12) in Eq (3.9), we obtain
‖∫c0(c−φ)a−1g(φ,ϖ(φ),ϖ(φ−s))dw(φ)‖pp≤Cp(M2a−12a−1)p−222p−1M2a−12a−1(Up2(‖ϖ(φ)‖pHp+‖ϖ(φ−s)‖pHp)+ψp). | (3.13) |
By putting Eqs (3.8) and (3.13) into Eq (3.3), we find that ‖ℏσ(ϖ(c))‖Hp<∞. So, the ℏσ is well-defined.
Now, we establish the result regarding existence and uniqueness.
Theorem 3.1. If (H1) and (H2) are satisfied, then Eq (1.1) with ϖ(0)=σ′ has a unique solution.
Proof. Taking η>0:
η>2p−1δΓ(2a−1), | (3.14) |
where
δ=2p−1Γp(a)(2p−1Up1M(pa−2a+1)(p−1)p−1(pa−2a+1)p−1+2p−1(M(2a−1)2a−1)p−22Up2Cp). | (3.15) |
The weighted norm ‖⋅‖η is
‖ϖ(c)‖η=esssupc∈[0,M](‖ϖ(c)‖ppE2a−1(ηc2a−1))1p,∀ϖ(c)∈Hp([0,M]). | (3.16) |
For ϖ(c) and ˜ϖ(c), we obtain
‖ℏσ(ϖ(c))−ℏσ(˜ϖ(c))‖pp≤2p−1Γp(a)‖∫c0(c−φ)a−1(f(φ,ϖ(φ),ϖ(φ−s))−f(φ,˜ϖ(φ),˜ϖ(φ−s)))dφ‖pp+2p−1Γp(a)‖∫c0(c−φ)a−1(g(φ,ϖ(φ),ϖ(φ−s))−g(φ,˜ϖ(φ),˜ϖ(φ−s)))dw(φ)‖pp. | (3.17) |
Using the Hölder's inequality and (H1), we obtain
‖∫c0(c−φ)a−1(f(φ,ϖ(φ),ϖ(φ−s))−f(φ,˜ϖ(φ),˜ϖ(φ−s)))dφ‖pp=m∑ȷ=1E(∫c0(c−φ)a−1(fı(φ,ϖ(φ),ϖ(φ−s))−fı(φ,˜ϖ(φ),˜ϖ(φ−s)))dφ)p≤m∑ȷ=1E((∫c0(c−φ)(a−1)(p−2)p−1dφ)p−1(∫c0(c−φ)2a−2|fı(φ,ϖ(φ),ϖ(φ−s))−fı(φ,˜ϖ(φ),˜ϖ(φ−s))|pdφ))≤2p−1Up1M(pa−2a+1)(p−1)p−1(pa−2a+1)p−1∫c0(c−φ)2a−2(‖ϖ(φ)−˜ϖ(φ))‖pp+‖ϖ(φ−s)−˜ϖ(φ−s))‖pp)dφ. | (3.18) |
Hence, we have
‖∫c0(c−φ)a−1(f(φ,ϖ(φ),ϖ(φ−s))−f(φ,˜ϖ(φ),˜ϖ(φ−s)))dφ‖pp≤2p−1Up1M(pa−2a+1)(p−1)p−1(pa−2a+1)p−1∫c0(c−φ)2a−2(‖ϖ(φ)−˜ϖ(φ))‖pp+‖ϖ(φ−s)−˜ϖ(φ−s))‖pp)dφ. | (3.19) |
However, using (H1) and the Burkholder-Davis-Gundy inequality, we have
‖∫c0(c−φ)a−1(g(φ,ϖ(φ),ϖ(φ−s))−g(φ,˜ϖ(φ),˜ϖ(φ−s)))dw(φ)‖pp=m∑ȷ=1E|∫c0(c−φ)a−1(gı(φ,ϖ(φ),ϖ(φ−s))−gı(φ,˜ϖ(φ),˜ϖ(φ−s)))dw(φ)|p≤m∑ȷ=1CpE|∫c0(c−φ)2a−2|gı(φ,ϖ(φ),ϖ(φ−s))−gı(φ,˜ϖ(φ),˜ϖ(φ−s))|2dφ|p2≤m∑ȷ=1CpE∫c0(c−φ)2a−2|gı(φ,ϖ(φ),ϖ(φ−s))−gı(φ,˜ϖ(φ),˜ϖ(φ−s))|pdφ(∫c0(c−φ)2a−2dφ)p−22≤2p−1(M(2a−1)2a−1)p−22Up2Cp∫c0(c−φ)2a−2(‖ϖ(φ)−˜ϖ(φ)‖pp+‖ϖ(φ−s)−˜ϖ(φ−s)‖pp)dφ. | (3.20) |
So, from above
‖∫c0(c−φ)a−1(g(φ,ϖ(φ),ϖ(φ−s))−g(φ,˜ϖ(φ),˜ϖ(φ−s)))dw(φ)‖pp≤2p−1(M(2a−1)2a−1)p−22Up2Cp∫c0(c−φ)2a−2(‖ϖ(φ)−˜ϖ(φ)‖pp+‖ϖ(φ−s)−˜ϖ(φ−s)‖pp)dφ. | (3.21) |
Thus, ∀c∈[0,M], we have
‖ℏσ(ϖ(c))−ℏσ(˜ϖ(c))‖pp≤δ∫c0(‖ϖ(φ)−˜ϖ(φ)‖pp+‖ϖ(φ−s)−˜ϖ(φ−s)‖pp)(c−φ)2a−2dφ. | (3.22) |
So,
‖ℏσϖ(c)−ℏσ˜ϖ(c)‖ppE2a−1(ηc2a−1)≤1E2a−1(ηc2a−1)δ∫c0(c−φ)2a−2(E2a−1(ηc2a−1)‖ϖ(φ)−˜ϖ(φ)‖ppE2a−1(ηc2a−1)+E2a−1(η(c−s)2a−1)‖ϖ(φ−s)−˜ϖ(φ−s)‖ppE2a−1(η(c−s)2a−1))dφ≤1E2a−1(ηc2a−1)δ∫c0(c−φ)2a−2(E2a−1(ηc2a−1)esssupφ∈[0,M](‖ϖ(φ)−˜ϖ(φ)‖ppE2a−1(ηc2a−1))+E2a−1(η(c−s)2a−1)esssupφ∈[0,M](‖ϖ(φ−s)−˜ϖ(φ−s)‖ppE2a−1(η(c−s)2a−1)))dφ≤‖ϖ(φ)−˜ϖ(φ)‖pηE2a−1(ηc2a−1)δ∫c0(c−φ)2a−2(E2a−1(ηc2a−1)+E2a−1(η(c−s)2a−1))dφ≤2‖ϖ(φ)−˜ϖ(φ)‖pηE2a−1(ηc2a−1)δ∫c0(c−φ)2a−2E2a−1(ηc2a−1)dφ. | (3.23) |
Now, we use the following:
1Γ(2a−1)∫c0(c−φ)2a−2E2a−1(ηc2a−1)dφ≤1ηE2a−1(ηc2a−1). |
We obtain the required result from Eq (3.23).
‖ℏσ(ϖ(c))−ℏσ(˜ϖ(c))‖η≤(2δΓ(2a−1)η)1p‖ϖ(φ)−˜ϖ(φ)‖η. | (3.24) |
From Eq (3.14), we obtain 2δΓ(2a−1)η<1.
Theorem 3.2. If ξa(c,σ) is a solution that is Con-D on a, then
lima→˜aesssupc∈[0,M]‖ξa(c,σ)−ξ˜a(c,σ)‖p=0. | (3.25) |
Proof. Assume a, ˜a∈(12,1). Then,
ξa(c,σ)−ξ˜a(c,σ)=1Γ(a)∫c0(c−φ)a−1(f(φ,ξa(φ,σ),ξa(φ−s,σ))−f(φ,ξ˜a(φ,σ),ξ˜a(φ−s,σ)))dφ+∫c0(1Γ(a)(c−φ)a−1−1Γ(˜a)(c−φ)˜a−1)f(φ,ξ˜a(φ,σ),ξ˜a(φ−s,σ))dφ+1Γ(a)∫c0(c−φ)a−1(g(φ,ξa(φ,σ),ξa(φ−s,σ))−g(φ,ξ˜a(φ,σ),ξ˜a(φ−s,σ)))dw(φ)+∫c0(1Γ(a)(c−φ)a−1−1Γ(˜a)(c−φ)˜a−1)g(φ,ξ˜a(φ,σ),ξ˜a(φ−s,σ))dw(φ). | (3.26) |
We extract the subsequent outcome from Eq (3.26) by employing Eq (3.2).
‖ξa(c,σ)−ξ˜a(c,σ)‖pp≤2pδ∫c0(c−φ)2a−2‖ξa(c,σ)−ξ˜a(c,σ)‖ppdφ+22p−2‖∫c0(1Γ(a)(c−φ)a−1−1Γ(˜a)(c−φ)˜a−1)f(φ,ξ˜a(φ,σ),ξ˜a(φ−s,σ))dφ‖pp+22p−2‖∫c0(1Γ(a)(c−φ)a−1−1Γ(˜a)(c−φ)˜a−1)g(φ,ξ˜a(φ,σ),ξ˜a(φ−s,σ))dw(φ)‖pp. | (3.27) |
Suppose the following:
Φ(c,φ,a,˜a)=|1Γ(a)(c−φ)a−1−1Γ(˜a)(c−φ)˜a−1|. | (3.28) |
By Hölder's inequality, (H1), (H2), and Eq (3.2), we have
‖∫c0(1Γ(a)(c−φ)a−1−1Γ(˜a)(c−φ)˜a−1)f(φ,ξ˜a(φ,σ),ξ˜a(φ−s,σ))dφ‖pp≤∑mι=1E(∫c0Φ(c,φ,a,˜a)|fı(φ,ξ˜a(φ,σ),ξ˜a(φ−s,σ))|dφ)p≤∑mι=1E((∫c0(Φ(c,φ,a,˜a))pp−1dφ)p−1∫c0|fı(φ,ξ˜a(φ,σ),ξ˜a(φ−s,σ))|pdφ)≤(∫c0(Φ(c,φ,a,˜a))2dφ)p2(∫c01dφ)p−22∫c0‖f(φ,ξ˜a(φ,σ),ξ˜a(φ−s,σ))‖ppdφ≤(∫c0(Φ(c,φ,a,˜a))2dφ)p2Mp−22∫c02p−1(Up1(‖ξ˜a(φ,σ)‖pp+‖ξ˜a(φ−s,σ)‖pp)+‖f(φ,0)‖pp)dφ≤(∫c0(Φ(c,φ,a,˜a))2dφ)p2Mp22p−1(2p−1Up1(esssupc∈[0,M]‖ξ˜a(φ,σ)‖pp+esssupc∈[0,M]‖ξ˜a(φ−s,σ)‖pp)+ψp). | (3.29) |
Now, by Burkholder-Davis-Gundy inequality, Eq (3.28), (H1), and (H2), we obtain
‖∫c0(1Γ(a)(c−φ)a−1−1Γ(˜a)(c−φ)˜a−1)g(φ,ξ˜a(φ,σ),ξ˜a(φ−s,σ))dw(φ)‖pp=∑mι=1E|∫c0Φ(c,φ,a,˜a)gı(φ,ξ˜a(φ,σ),ξ˜a(φ−s,σ))dw(φ)|p≤∑mι=1CpE|∫c0Φ2(c,φ,a,˜a)|gı(φ,ξ˜a(φ,σ),ξ˜a(φ−s,σ))|2dw(φ)|p2≤∑mι=1CpE[(∫c0Φ2(c,φ,a,˜a)|gı(φ,ξ˜a(φ,σ),ξ˜a(φ−s,σ))|pdφ)2p(∫c0Φ2(c,φ,a,˜a)dφ)p−2p]p2=Cp∫c0Φ2(c,φ,a,˜a)‖g(φ,ξ˜a(φ,σ),ξ˜a(φ−s,σ))‖ppdφ(∫c0Φ2(c,φ,a,˜a)dφ)p−22≤Cp(∫c0Φ2(c,φ,a,˜a)dφ)p22p−1(2p−1Up2(esssupc∈[0,M]‖ξ˜a(φ,σ)‖pp+esssupc∈[0,M]‖ξ˜a(φ−s,σ)‖pp)+ψp). | (3.30) |
Thus, we obtain the following:
‖ξa(c,σ)−ξ˜a(c,σ)‖ppE2a−1(ηc2a−1)≤2pδ∫c0(c−φ)2a−2‖ξa(φ,σ)−ξ˜a(φ,σ)‖ppE2a−1(ηc2a−1)E2a−1(ηc2a−1)dφE2a−1(ηc2a−1)+23p−3(2p−1Up1(esssupc∈[0,M]‖ξ˜a(φ,σ)‖pp+esssupc∈[0,M]‖ξ˜a(φ−s,σ)‖pp)+ψp)(∫c0(Φ(c,φ,a,˜a))2dφ)p2Mp2+23p−3(2p−1Up2(esssupc∈[0,M]‖ξ˜a(φ,σ)‖pp+esssupc∈[0,M]‖ξ˜a(φ−s,σ)‖pp)+ψp)Cp(∫c0(Φ(c,φ,a,˜a))2dφ)p2≤2pδΓ(2a−1)η‖ξa(c,σ)−ξ˜a(c,σ)‖pη+23p−3(2p−1Up1(esssupc∈[0,M]‖ξ˜a(φ,σ)‖pp+esssupc∈[0,M]‖ξ˜a(φ−s,σ)‖pp)+ψp)(∫c0(Φ(c,φ,a,˜a))2dφ)p2Mp2+23p−3(2p−1Up2(esssupc∈[0,M]‖ξ˜a(φ,σ)‖pp+esssupc∈[0,M]‖ξ˜a(φ−s,σ)‖pp)+ψp)Cp(∫c0(Φ(c,φ,a,˜a))2dφ)p2. | (3.31) |
From the above, we have
(1−2pδΓ(2a−1)η)‖ξa(c,σ)−ξ˜a(c,σ)‖pη≤23p−3(2p−1Up1(esssupc∈[0,M]‖ξ˜a(φ,σ)‖pp+esssupc∈[0,M]‖ξ˜a(φ−s,σ)‖pp)+ψp)(∫c0(Φ(c,φ,a,˜a))2dφ)p2Mp2+23p−3(2p−1Up2(esssupc∈[0,M]‖ξ˜a(φ,σ)‖pp+esssupc∈[0,M]‖ξ˜a(φ−s,σ)‖pp)+ψp)Cp(∫c0(Φ(c,φ,a,˜a))2dφ)p2. | (3.32) |
Now, we prove the following:
lim˜a→asupc∈[0,M]∫c0(Φ(c,φ,a,˜a))2dφ=0. |
We possess the following:
∫c0(Φ(c,φ,a,˜a))2dφ=∫c0(c−φ)2a−2Γ2(a)dφ+∫c0(c−φ)2˜a−2Γ2(˜a)dφ−2∫c0(c−φ)a+˜a−2Γ(a)Γ(˜a)dφ=(M(2a−1)(2a−1))1Γ2(a)+(M(2˜a−1)(2˜a−1))1Γ2(˜a)−2M(a+˜a−1)(a+˜a−1)Γ(a)Γ(˜a). | (3.33) |
It thereby demonstrated the necessary outcome.
Theorem 3.3. For σ,Ψ∈Ap0, we have
‖ξa(c,σ)−ξa(c,Ψ)‖p≤U‖σ−Ψ‖p,∀c∈[0,M]. | (3.34) |
Proof. As we have
ξa(c,σ)−ξa(c,Ψ)=σc(ϑ−1)(1−a)Γ(ϑ(1−a)+a)−Ψc(ϑ−1)(1−a)Γ(ϑ(1−a)+a)+1Γ(a)∫c0(c−φ)a−1(f(φ,ξa(φ,σ),ξa(φ−s,σ))−f(φ,ξa(φ,Ψ),ξa(φ−s,Ψ)))dφ+1Γ(a)∫c0(c−φ)a−1(g(φ,ξa(φ,σ),ξa(φ−s,σ))−g(φ,ξa(φ,Ψ),ξa(φ−s,Ψ)))dw(φ). | (3.35) |
By applying Eq (3.2), we obtain
‖ξa(c,σ)−ξa(c,Ψ)‖pp≤2p−1‖σc(ϑ−1)(1−a)Γ(ϑ(1−a)+a)−Ψc(ϑ−1)(1−a)Γ(ϑ(1−a)+a)‖pp+22p−2Γp(a)‖∫c0(c−φ)a−1(f(φ,ξa(φ,σ),ξa(φ−s,σ))−f(φ,ξa(φ,Ψ),ξa(φ−s,Ψ)))dφ‖pp+22p−2Γp(a)‖∫c0(c−φ)a−1(g(φ,ξa(φ,σ),ξa(φ−s,σ)))−g(φ,ξa(φ,σ),ξa(φ−s,σ)))dw(φ)‖pp. | (3.36) |
By Hölder's inequality and , we obtain
(3.37) |
Hence, we have
(3.38) |
Now, utilizing , Hölder's inequality, and Burkholder–Davis–Gundy inequality, we derive
(3.39) |
By substituting Eqs (3.37) and (3.39) into Eq (3.36), we obtain
(3.40) |
By referring to the Grönwall inequality, we conclude
Thus, we obtain the following result:
Hence, we
The proof is so done.
The following result pertains to regularity.
Theorem 3.4. If and are valid, then for , we have
(3.41) |
Proof. For , then from Eq (3.2):
(3.42) |
By Hölder's inequality and Burkholder-Davis-Gundy inequality, we obtain
We have
And also
Furthermore,
(3.43) |
So,
Hence,
where
Thus, we obtain the following:
Now, we establish results concerning the average principle in the th moment for SFDDEs within the framework of the HFrD.
Lemma 4.1. For , when , we obtain
where .
Proof. By , and Eq (3.2),
The following is a lemma regarding the time-scale property of the HFrD.
Lemma 4.2. Suppose the time scale , then
Proof. The HFrD of order and is defined as
Let , and by the chain rule, . So, we have
From the above, we have
likewise, we obtain
So, we have the following result:
Now, we establish an important result concerning average principle.
(4.1) |
Suppose . By Lemma 4.2 and from Eq (4.1):
By considering and representing and , we get
Despite the loss of generality, can be stated. The standard form of Eq (1.1) can be obtained by applying .
(4.2) |
Thus, Eq (4.2) can be expressed integrally as
(4.3) |
for . The average of Eq (3.35) is as
(4.4) |
where .
Theorem 4.1. When and , and with , then
(4.5) |
Proof. By Eqs (3.35) and (4.4), for , we have
(4.6) |
Via Jensen's inequality, we have
(4.7) |
Utilizing Eq (4.7) in Eq (4.5),
(4.8) |
From , we have
(4.9) |
By Hölder's inequality, Jensen's inequality, and applied to :
(4.10) |
here, .
By Hölder's inequality, Jensen's inequality, and on ,
(4.11) |
where .
The following is provided by via Jensen's inequality:
(4.12) |
By applying , Hölder's inequality, and Burkholder-Davis-Gundy inequality on ,
(4.13) |
where .
By Hölder's inequality and Burkholder-Davis-Gundy inequality,
(4.14) |
where
Using Eqs (4.9) to (4.14) in (4.8),
(4.15) |
From Eq (4.15),
So, for and with , we obtain
(4.16) |
where
So, proved the required result.
To better understand the theoretical results established in this research, we present examples along with graphical comparisons of the original and averaged solutions. Figures 1–4 illustrate these comparisons, supporting the validity of our theoretical findings.
Example 1. Consider the following:
(5.1) |
where , , and
The criteria of existence and uniqueness are fulfilled by and .
The averages of and are as
The corresponding average is
(5.2) |
All conditions in Theorem 4.1 are satisfied by system (5.1). As a result, solutions and are equivalent at the th moment in the limit as . Figure 1 presents a graphical comparison between solutions of the original system (5.1) and averaged system (5.2), demonstrating a strong agreement between solutions and and confirming the accuracy of our theoretical conclusions.
Example 2. Take the following:
(5.3) |
where , , and
The criteria of existence and uniqueness are fulfilled by and .
The averages of and are as
The corresponding average is
(5.4) |
All requirements in Theorem 4.1 are fulfilled by Example 2. Consequently, solutions and are equivalent at the th moment in the limit as . Figure 2 provides a graphical comparison between solutions of the original system (5.3) and the averaged system (5.4), illustrating a strong agreement between and and validating the accuracy of our theoretical findings.
Example 3. Examine the following:
(5.5) |
where , , and
and satisfy the needs of existence and uniqueness.
The following are the averages:
Thus,
(5.6) |
All conditions stated in Theorem 4.1 are satisfied by Example 3. As a result, solutions and are equivalent at the th moment in the limit as . Figure 3 depicts a graphical comparison between solutions of the original system (5.5) and the averaged system (5.6), demonstrating a strong agreement between and and confirming the accuracy of our theoretical results.
Example 4. Take the following:
(5.7) |
where , , and
The and satisfy the conditions of existence and uniqueness.
The averages of and :
So, we get
(5.8) |
Figure 4 presents the same results as in Examples 1–3.
Our research work is important as follows: First, by proving results of existence and uniqueness, Con-D, regularity, and average principle in the th moment, we extend the outcomes for . Secondly, for the first time in the literature, we construct well-posedness and average principle results in the context of HFrD of SFDDEs. Third, we consider SFDDEs, which represent a more generalized class of FSDEs, and we present some graphical results to prove the validity of our results.
The following are the main points we can work on in the future: We can explore the important concept of controllability for SFDDEs concerning HFrD. We can establish well-posedness, regularity, and average principle results for stochastic Volterra-Fredholm integral equations.
W. Albalawi, M. I. Liaqat, F. U. Din, K. S. Nisar and A. H. Abdel-Aty: Conceptualization, Methodology, Software, Validation, Formal analysis, Investigation, Writing–original draft preparation, Writing–review and editing, Visualization, Resources, Funding acquisition. All authors have read and approved the final version of the manuscript for publication.
The authors declare they have not used Artificial Intelligence (AI) tools in the creation of this article.
The research work was supported by Princess Nourah bint Abdulrahman University Researchers Supporting Project number (PNURSP2025R157), Princess Nourah bint Abdulrahman University, Riyadh, Saudi Arabia. The authors are thankful to the Deanship of Graduate Studies and Scientific Research at University of Bisha for supporting this work through the Fast-Track Research Support Program.
The authors declare no conflicts of interest.
[1] |
Murata K, Wolf M (2018) Cryo-electron microscopy for structural analysis of dynamic biological macromolecules. Biochim Biophys Acta-Gen Subj 1862: 324-334. https://doi.org/10.1016/j.bbagen.2017.07.020 ![]() |
[2] |
Zanotti G, Grinzato A (2021) Structure of filamentous viruses. Curr Opin Virol 51: 25-33. https://doi.org/10.1016/j.coviro.2021.09.006 ![]() |
[3] |
Ruska E (1987) The development of the electron microscope and of electron microscopy. Biosci Rep 7: 607-629. https://doi.org/10.1007/BF01127674 ![]() |
[4] |
Brenner S, Horne RW (1959) A negative staining method for high resolution electron microscopy of viruses. Biochim Biophys Acta 34: 103-110. https://doi.org/10.1016/0006-3002(59)90237-9 ![]() |
[5] |
Von Borries B, Ruska E, Ruska H (1938) Bakterien und virus in übermikroskopischer aufnahme. Klin Wochenschr 17: 921-925. https://doi.org/10.1007/BF01775798 ![]() |
[6] |
Kausche GA, Pfankuch E, Ruska H (1939) Die sichtbarmachung von pflanzlichem virus im Übermikroskop. Naturwissenschaften 27: 292-299. https://doi.org/10.1007/BF01493353 ![]() |
[7] |
Dubochet J, McDowall AW (1981) Vitrification of pure water for electron microscopy. J Microsc 124: 3-4. ![]() |
[8] |
Dubochet J, Lepault J, Freeman R, et al. (1982) Electron microscopy of frozen water and aqueous solutions. J Microsc 128: 219-237. https://doi.org/10.1111/j.1365-2818.1982.tb04625.x ![]() |
[9] |
Dubochet J, Adrian M, Chang JJ, et al. (1988) Cryoelectron microscopy of vitrified specimens. Q Rev Biophys 21: 129-228. ![]() |
[10] |
Frank J, Shimkin B, Dowse H (1981) SPIDER—a modular software system for electron image processing. Ultramicroscopy 6: 343-357. https://doi.org/10.1142/9789813234864_0008 ![]() |
[11] | Van Heel M, Frank J (1981) Use of multivariates statistics in analysing the images of biological macromolecules. Ultramicroscopy 6: 187-194. https://doi.org/10.1016/S0304-3991(81)80197-0 |
[12] |
Ludtke SJ, Baldwin PR, Chiu W (1999) EMAN: semiautomated software for high-resolution single-particle reconstructions. J Struct Biol 128: 82-97. https://doi.org/10.1006/jsbi.1999.4174 ![]() |
[13] |
Sorzano COS, Marabini R, Velázquez-Muriel J, et al. (2004) XMIPP: a new generation of an open-source image processing package for electron microscopy. J Struct Biol 148: 194-204. https://doi.org/10.1016/j.jsb.2004.06.006 ![]() |
[14] |
Suloway C, Pulokas J, Fellmann D, et al. (2005) Automated molecular microscopy: the new Leginon system. J Struct Biol 151: 41-60. https://doi.org/10.1016/j.jsb.2005.03.010 ![]() |
[15] |
Tang G, Peng L, Baldwin PR, et al. (2007) EMAN2: an extensible image processing suite for electron microscopy. J Struct Biol 157: 38-46. https://doi.org/10.1016/j.jsb.2006.05.009 ![]() |
[16] |
Lander GC, Stagg SM, Voss NR, et al. (2009) Appion: an integrated, database-driven pipeline to facilitate EM image processing. J Struct Biol 166: 95-102. https://doi.org/10.1016/j.jsb.2009.01.002 ![]() |
[17] |
Scheres SHW (2012) RELION: implementation of a Bayesian approach to cryo-EM structure determination. J Struct Biol 180: 519-530. https://doi.org/10.1016/j.jsb.2012.09.006 ![]() |
[18] |
Grigorieff N, Grant T, Rohou A (2017) cisTEM: user-friendly software for single-particle image processing. Acta Crystallogr Sect A 73: C1368-C1368. ![]() |
[19] |
Punjani A, Rubinstein JL, Fleet DJ, et al. (2017) CryoSPARC: Algorithms for rapid unsupervised cryo-EM structure determination. Nat Methods 14: 290-296. https://doi.org/10.1038/nmeth.4169 ![]() |
[20] |
Conesa Mingo P, Gutierrez J, Quintana A, et al. (2018) Scipion web tools: Easy to use cryo-EM image processing over the web. Protein Sci 27: 269-275. https://doi.org/10.1002/pro.3315 ![]() |
[21] |
Kimanius D, Forsberg BO, Scheres SHW, et al. (2016) Accelerated cryo-EM structure determination with parallelisation using GPUs in RELION-2. Elife 5: 1-21. https://doi.org/10.7554/eLife.18722.001 ![]() |
[22] | Luecken U, Van HG, Schuurmans F, et al. Method of using a direct electron detector for a TEM (2011). |
[23] |
Milazzo AC, Cheng A, Moeller A, et al. (2011) Initial evaluation of a direct detection device detector for single particle cryo-electron microscopy. J Struct Biol 176: 404-408. https://doi.org/10.1016/j.jsb.2011.09.002 ![]() |
[24] |
Ruskin RS, Yu Z, Grigorieff N (2013) Quantitative characterization of electron detectors for transmission electron microscopy. J Struct Biol 184: 385-393. https://doi.org/10.1016/j.jsb.2013.10.016 ![]() |
[25] |
Kuijper M, van Hoften G, Janssen B, et al. (2015) FEI's direct electron detector developments: Embarking on a revolution in cryo-TEM. J Struct Biol 192: 179-187. https://doi.org/10.1016/j.jsb.2015.09.014 ![]() |
[26] |
Ripstein ZA, Rubinstein JL (2016) Processing of Cryo-EM movie data. Methods in Enzymology : 103-124. https://doi.org/10.1016/bs.mie.2016.04.009 ![]() |
[27] |
Li X, Mooney P, Zheng S, et al. (2013) Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM. Nat Methods 10: 584-590. https://doi.org/10.1038/nmeth.2472 ![]() |
[28] |
Kühlbrandt W (2014) The resolution revolution. Science 343: 1443-1444. https://doi.org/10.1126/science.1251652 ![]() |
[29] |
Bai XC, McMullan G, Scheres SHW (2015) How cryo-EM is revolutionizing structural biology. Trends Biochem Sci 40: 49-57. https://doi.org/10.1016/j.tibs.2014.10.005 ![]() |
[30] |
Lawson CL, Patwardhan A, Baker ML, et al. (2016) EMDataBank unified data resource for 3DEM. Nucleic Acids Res 44: D396-403. https://doi.org/10.1093/nar/gkv1126 ![]() |
[31] |
Nakane T, Kotecha A, Sente A, et al. (2020) Single-particle cryo-EM at atomic resolution. Nature 587: 152-156. https://doi.org/10.1038/s41586-020-2829-0 ![]() |
[32] |
Weis F, Beckers M, von der Hocht I, et al. (2019) Elucidation of the viral disassembly switch of tobacco mosaic virus. EMBO Rep 20: e48451. https://doi.org/10.15252/embr.201948451 ![]() |
[33] |
Grinzato A, Kandiah E, Lico C, et al. (2020) Atomic structure of potato virus X, the prototype of the Alphaflexiviridae family. Nat Chem Biol 16: 564-569. https://doi.org/10.1038/s41589-020-0502-4 ![]() |
[34] |
Masuyer G, Conrad J, Stenmark P (2017) The structure of the tetanus toxin reveals pH-mediated domain dynamics. EMBO Rep 18: 1306-1317. https://doi.org/10.15252/embr.201744198 ![]() |
[35] |
Pirazzini M, Grinzato A, Corti D, et al. (2021) Exceptionally potent human monoclonal antibodies are effective for prophylaxis and therapy of tetanus in mice. J Clin Invest 131: e151676. https://doi.org/10.1172/JCI151676 ![]() |
[36] |
Sobti M, Smits C, Wong ASW, et al. (2016) Cryo-EM structures of the autoinhibited E. coli ATP synthase in three rotational states. Elife 5: e21598. https://doi.org/10.7554/eLife.21598.001 ![]() |
[37] |
Skiniotis G, Southworth DR (2016) Single-particle cryo-electron microscopy of macromolecular complexes. Microscopy 65: 9-22. https://doi.org/10.1093/jmicro/dfv366 ![]() |
[38] |
Chen JZ, Sachse C, Xu C, et al. (2008) A dose-rate effect in single-particle electron microscopy. J Struct Biol 161: 92-100. https://doi.org/10.1016/j.jsb.2007.09.017 ![]() |
[39] |
Cho H, Hyun J, Kim J, et al. (2013) Measurement of ice thickness on vitreous ice embedded cryo-EM grids: investigation of optimizing condition for visualizing macromolecules. J Anal Sci Technol 4: 7. https://doi.org/10.1186/2093-3371-4-7 ![]() |
[40] |
Glaeser RM (2018) Proteins, interfaces, and cryo-EM grids. Curr Opin Colloid Interface Sci 34: 1-8. https://doi.org/10.1016/j.cocis.2017.12.009 ![]() |
[41] |
D'Imprima E, Floris D, Joppe M, et al. (2019) Protein denaturation at the air-water interface and how to prevent it. Elife 8: e42747. https://doi.org/10.7554/eLife.42747.001 ![]() |
[42] |
Pantelic RS, Suk JW, Magnuson CW, et al. (2011) Graphene: substrate preparation and introduction. J Struct Biol 174: 234-238. https://doi.org/10.1016/j.jsb.2010.10.002 ![]() |
[43] |
Russo CJ, Passmore LA (2014) Controlling protein adsorption on graphene for cryo-EM using low-energy hydrogen plasmas. Nat Methods 11: 649-652. https://doi.org/10.1038/nmeth.2931 ![]() |
[44] |
Russo CJ, Passmore LA (2014) Ultrastable gold substrates for electron cryomicroscopy. Science 346: 1377-1380. https://doi.org/10.1126/science.1259530 ![]() |
[45] |
Glaeser RM (1979) Prospects for extending the resolution limit of the electron microscope. J Microsc 117: 77-91. https://doi.org/10.1111/j.1365-2818.1979.tb00232.x ![]() |
[46] |
Williams DB, Carter CB Transmission Electron Microscopy: A Textbook for Materials Science (2009). ![]() |
[47] |
Frank J (2006) Three-dimensional electron microscopy of macromolecular assemblies: visualization of biological molecules in their native state. Oxford University Press. ![]() |
[48] |
Williams DB, Carter CB (2009) Planar defects. Transmission Electron Microscopy . Boston: Springer 419-439. https://doi.org/10.1007/978-0-387-76501-3_25 ![]() |
[49] |
Williams DB, Carter CB (2009) Phase-contrast images. Transmission Electron Microscopy : 389-405. https://doi.org/10.1007/978-0-387-76501-3_23 ![]() |
[50] |
Wade RH (1992) A brief look at imaging and contrast transfer. Ultramicroscopy 46: 145-156. https://doi.org/10.1016/0304-3991(92)90011-8 ![]() |
[51] | Kohl H, Reimer L (2008) Transmission Electron Microscopy: Physics of Image Formation. New York: Springer-Verlag. https://doi.org/10.1007/978-0-387-40093-8 |
[52] |
Saad A, Ludtke SJ, Jakana J, et al. (2001) Fourier amplitude decay of electron cryomicroscopic images of single particles and effects on structure determination. J Struct Biol 133: 32-42. https://doi.org/10.1006/jsbi.2001.4330 ![]() |
[53] |
Faruqi AR, Subramaniam S (2000) CCD detectors in high-resolution biological electron microscopy. Q Rev Biophys 33: 1-27. https://doi.org/10.1017/S0033583500003577 ![]() |
[54] | Meyer R, Kirkland A Direct electron detector (2007). |
[55] |
Li X, Mooney P, Zheng S, et al. (2013) Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM. Nat Methods 10: 584-590. https://doi.org/10.1038/nmeth.2472 ![]() |
[56] |
Scheres SHW (2014) Beam-induced motion correction for sub-megadalton cryo-EM particles. Elife 3: e03665. https://doi.org/10.7554/eLife.03665.001 ![]() |
[57] |
Shigematsu H, Sigworth FJ (2013) Noise models and cryo-EM drift correction with a direct-electron camera. Ultramicroscopy 131: 61-69. https://doi.org/10.1016/j.ultramic.2013.04.001 ![]() |
[58] |
Nogales E (2016) The development of cryo-EM into a mainstream structural biology technique. Nat Methods 13: 24-27. https://doi.org/10.1038/nmeth.3694 ![]() |
[59] |
McMullan G, Faruqi AR (2008) Electron microscope imaging of single particles using the Medipix2 detector. Nucl Instruments Methods Phys Res Sect A Accel Spectrometers, Detect Assoc Equip 591: 129-133. https://doi.org/10.1016/j.nima.2008.03.041 ![]() |
[60] |
Brilot AF, Chen JZ, Cheng A, et al. (2012) Beam-induced motion of vitrified specimen on holey carbon film. J Struct Biol 177: 630-637. https://doi.org/10.1016/j.jsb.2012.02.003 ![]() |
[61] |
Mindell JA, Grigorieff N (2003) Accurate determination of local defocus and specimen tilt in electron microscopy. J Struct Biol 142: 334-347. https://doi.org/10.1016/S1047-8477(03)00069-8 ![]() |
[62] |
Rohou A, Grigorieff N (2015) CTFFIND4: Fast and accurate defocus estimation from electron micrographs. J Struct Biol 192: 216-221. https://doi.org/10.1016/j.jsb.2015.08.008 ![]() |
[63] |
Zhang K (2016) Gctf: Real-time CTF determination and correction. J Struct Biol 193: 1-12. https://doi.org/10.1016/j.jsb.2015.11.003 ![]() |
[64] | MacKay DJC (2003) Information Theory, Inference and Learning Algorithms. Cambridge university press. |
[65] |
Sigworth FJ, Doerschuk PC, Carazo JM, et al. (2010) An introduction to maximum-likelihood methods in cryo-EM. Methods Enzym 482: 263-294. https://doi.org/10.1016/S0076-6879(10)82011-7 ![]() |
[66] | Zarzecka U, Grinzato A, Kandiah E, et al. Functional analysis and cryo-electron microscopy of Campylobacter jejuni serine protease HtrA (2020). https://doi.org/10.1080/19490976.2020.1810532 |
[67] |
Orlova EV, Saibil HR (2011) Structural analysis of macromolecular assemblies by electron microscopy. Chem Rev 111: 7710-7748. https://doi.org/10.1021/cr100353t ![]() |
[68] |
Scheres SHW (2012) A Bayesian view on cryo-EM structure determination. J Mol Biol 415: 406-418. https://doi.org/10.1016/j.jmb.2011.11.010 ![]() |
[69] |
Liao HY, Frank J (2010) Definition and estimation of resolution in single-particle reconstructions. Structure 18: 768-775. https://doi.org/10.1016/j.str.2010.05.008 ![]() |
[70] |
Böttcher B, Wynne SA, Crowther RA (1997) Determination of the fold of the core protein of hepatitis B virus by electron cryomicroscopy. Nature 386: 88-91. https://doi.org/10.1038/386088a0 ![]() |
[71] |
Rosenthal PB, Henderson R (2003) Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy. J Mol Biol 333: 721-745. https://doi.org/10.1016/j.jmb.2003.07.013 ![]() |
[72] |
Henderson R, Sali A, Baker ML, et al. (2012) Outcome of the first electron microscopy validation task force meeting. Structure 20: 205-214. ![]() |