| Type | Number |
| Research | 23 |
| Review | 11 |
| Editorial | 2 |
| Communication | 2 |
| Brief report | 1 |
The primary objective of document-level event extraction is to extract relevant event information from lengthy texts. However, many existing methods for document-level event extraction fail to fully incorporate the contextual information that spans across sentences. To overcome this limitation, the present study proposes a document-level event extraction model called Integration Across Texts and Reciprocal Feedback (IATRF). The proposed model constructs a heterogeneous graph and employs a graph convolutional network to enhance the connection between document and entity information. This approach facilitates the acquisition of semantic information enriched with document-level context. Additionally, a Transformer classifier is introduced to transform multiple event types into a multi-label classification task. To tackle the challenge of event argument recognition, this paper introduces the Reciprocal Feedback Argument Extraction strategy. Experimental results conducted on both our COSM dataset and the publicly available ChFinAnn dataset demonstrate that the proposed model outperforms previous methods in terms of F1 value, thus confirming its effectiveness. The IATRF model effectively solves the problems of long-distance document context-aware representation and cross-sentence argument dispersion.
Citation: Min Zuo, Jiaqi Li, Di Wu, Yingjun Wang, Wei Dong, Jianlei Kong, Kang Hu. Advancing document-level event extraction: Integration across texts and reciprocal feedback[J]. Mathematical Biosciences and Engineering, 2023, 20(11): 20050-20072. doi: 10.3934/mbe.2023888
| [1] | Xu Guo . Annual Report 2021. AIMS Microbiology, 2022, 8(1): 103-107. doi: 10.3934/microbiol.2022009 |
| [2] | Xu Guo . Annual Report 2023. AIMS Microbiology, 2024, 10(1): 62-67. doi: 10.3934/microbiol.2024004 |
| [3] | Nathan L'Etoile, Lindsay Brim, Susan Coffin, Ericka Hayes . Report of an outbreak of enterovirus disease in a neonatal intensive care unit and a systematic review of the literature. AIMS Microbiology, 2025, 11(1): 167-181. doi: 10.3934/microbiol.2025009 |
| [4] | Dolanchampa Modak, Silpak Biswas, Agnibho Mondal, Malabika Biswas, Maria Teresa Mascellino, Banya Chakraborty, Simmi Tiwari, Ajit Dadaji Shewale, Tushar Nale, Rupali Dey . Seroprevalence of brucellosis among animal handlers in West Bengal, India: an occupational health study. AIMS Microbiology, 2024, 10(1): 1-11. doi: 10.3934/microbiol.2024001 |
| [5] | María José Lorenzo Pisarello, Antonela Marquez, Adriana Perez Chaia, Jaime Daniel Babot . Targeting gut health: Probiotics as promising therapeutics in alcohol-related liver disease management. AIMS Microbiology, 2025, 11(2): 410-435. doi: 10.3934/microbiol.2025019 |
| [6] | Alexey V. Rakov, Natalya A. Kuznetsova, Anatoly A. Yakovlev . Genetic diversity of Salmonella enterica subsp. enterica serovar Enteritidis in the Siberia and Far East of Russia based on plasmid profiles. AIMS Microbiology, 2020, 6(2): 106-120. doi: 10.3934/microbiol.2020007 |
| [7] | Taish Ramkisson, Diane Rip . Carbapenem resistance in Enterobacterales from agricultural, environmental and clinical origins: South Africa in a global context. AIMS Microbiology, 2023, 9(4): 668-691. doi: 10.3934/microbiol.2023034 |
| [8] | Divakar Dahiya, Caoimhin Mackin, Poonam Singh Nigam . Studies on bioactivities of Manuka and regional varieties of honey for their potential use as natural antibiotic agents for infection control related to wound healing and in pharmaceutical formulations. AIMS Microbiology, 2024, 10(2): 288-310. doi: 10.3934/microbiol.2024015 |
| [9] | Matthew Johnston, Michael McBride, Divakar Dahiya, Richard Owusu-Apenten, Poonam Singh Nigam . Antibacterial activity of Manuka honey and its components: An overview. AIMS Microbiology, 2018, 4(4): 655-664. doi: 10.3934/microbiol.2018.4.655 |
| [10] | Masashi Uema, Kenzo Yonemitsu, Yoshimasa Sasaki, Hiroshi Asakura . Detection of hepatitis E virus RNA from pig bile collected at a slaughterhouse in Japan. AIMS Microbiology, 2022, 8(4): 566-574. doi: 10.3934/microbiol.2022036 |
The primary objective of document-level event extraction is to extract relevant event information from lengthy texts. However, many existing methods for document-level event extraction fail to fully incorporate the contextual information that spans across sentences. To overcome this limitation, the present study proposes a document-level event extraction model called Integration Across Texts and Reciprocal Feedback (IATRF). The proposed model constructs a heterogeneous graph and employs a graph convolutional network to enhance the connection between document and entity information. This approach facilitates the acquisition of semantic information enriched with document-level context. Additionally, a Transformer classifier is introduced to transform multiple event types into a multi-label classification task. To tackle the challenge of event argument recognition, this paper introduces the Reciprocal Feedback Argument Extraction strategy. Experimental results conducted on both our COSM dataset and the publicly available ChFinAnn dataset demonstrate that the proposed model outperforms previous methods in terms of F1 value, thus confirming its effectiveness. The IATRF model effectively solves the problems of long-distance document context-aware representation and cross-sentence argument dispersion.
AIMS Microbiology is an international Open Access journal devoted to publishing peer-reviewed, high quality, original papers in the field of microbiology. Together with the Editorial Office of AIMS Microbiology, I wish to testify my sincere gratitude to all authors, members of the editorial board and reviewers for their contribution to AIMS Microbiology in 2022.
In 2022, We received more than 200 manuscripts and 40 of them were accepted and published. These published papers include 23 research articles, 11 review articles, 2 editorials, 2 communications and 1 brief report papers. The authors of the manuscripts are from more than 20 countries. The data shows a significant increase of international collaborations on the research of microbiology.
An important part of our strategy has been preparation of special issues. 2 special issues published more than five papers. AIMS Microbiology have invited 17 experts to join our Editorial Board in 2022. We will continue to renew Editorial Board in 2022.
We hope that in 2023, AIMS Microbiology can receive and collect more excellent articles to be able to publish. The journal will dedicate to publishing high quality papers by regular issues as well as special issues organized by the members of the editorial board. We believe that all these efforts will increase the impact and citations of the papers published by AIMS Microbiology.
On behalf of
AIMS Microbiology Editorial Board
The submissions of our AIMS Microbiology journal in 2022 increased. In 2022, AIMS Microbiology published 4 issues, a total of 40 articles were published online, and the category of published articles is as follows:
| Type | Number |
| Research | 23 |
| Review | 11 |
| Editorial | 2 |
| Communication | 2 |
| Brief report | 1 |
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Peer Review Rejection rate: 49%
Publication time (from submission to online): 75 days
Organizing high-quality special issue is a very important work in 2022. In 2022, 7 special issues were called. Listed below are some examples of issues that have more than 5 papers. We encourage Editorial Board members to propose more potential topics, and to act as editors of special issues.
| Special issue | link | Papers |
| Biotechnological applications of microorganisms in Industry, Agriculture and Environment | https://www.aimspress.com/aimsmicro/article/6262/special-articles | 8 |
| Antimicrobials and Resistance | https://www.aimspress.com/aimsmicro/article/6209/special-articles | 5 |
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AIMS Microbiology has Editorial Board members representing researchers from 20 countries, which are shown below. We are constantly assembling the editorial board to be representative to a variety of disciplines across the field of microbiology. AIMS Microbiology has 81 members now, and 17 of them joined in 2022. We will continue to invite dedicated experts and researchers in order to renew the Editorial Board in 2022.
Top 5 Cited Papers in last 2 years.
| No. | Article | Citations |
| 1 | Salmonella spp. quorum sensing: an overview from environmental persistence to host cell invasion | 10 |
| 2 | Ways to improve biocides for metalworking fluid | 9 |
| 3 | Yeasts in different types of cheese | 7 |
| 4 | Exploring endophytes for in vitro synthesis of bioactive compounds similar to metabolites produced in vivo by host plants | 7 |
| 5 | Listeria monocytogenes isolates from Western Cape, South Africa exhibit resistance to multiple antibiotics and contradicts certain global resistance patterns | 6 |
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In the recent two years, our journal has developed much faster than before; Our journal has been indexed in Web of Science, Scopus and PubMed databases. We received more than 200 manuscript submissions and published 40 papers in 2022. We have added 17 new Editorial Board members.
In 2023, we expect to publish more articles to enhance the reputation. We will invite more experts in the field of microbiology to publish a review or research article. To set a goal, we would like to publish 40 high-quality articles in 2023. In 2023, we will continue to update our editorial board. We hope that more experts in the field of microbiology can help us review and guest special issues.
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Min Zuo, Jiaqi Li, Di Wu, Yingjun Wang, Wei Dong, Jianlei Kong, Kang Hu. Advancing document-level event extraction: Integration across texts and reciprocal feedback[J]. Mathematical Biosciences and Engineering, 2023, 20(11): 20050-20072. doi: 10.3934/mbe.2023888
| Type | Number |
| Research | 23 |
| Review | 11 |
| Editorial | 2 |
| Communication | 2 |
| Brief report | 1 |
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| Special issue | link | Papers |
| Biotechnological applications of microorganisms in Industry, Agriculture and Environment | https://www.aimspress.com/aimsmicro/article/6262/special-articles | 8 |
| Antimicrobials and Resistance | https://www.aimspress.com/aimsmicro/article/6209/special-articles | 5 |
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| No. | Article | Citations |
| 1 | Salmonella spp. quorum sensing: an overview from environmental persistence to host cell invasion | 10 |
| 2 | Ways to improve biocides for metalworking fluid | 9 |
| 3 | Yeasts in different types of cheese | 7 |
| 4 | Exploring endophytes for in vitro synthesis of bioactive compounds similar to metabolites produced in vivo by host plants | 7 |
| 5 | Listeria monocytogenes isolates from Western Cape, South Africa exhibit resistance to multiple antibiotics and contradicts certain global resistance patterns | 6 |
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| Type | Number |
| Research | 23 |
| Review | 11 |
| Editorial | 2 |
| Communication | 2 |
| Brief report | 1 |
| Special issue | link | Papers |
| Biotechnological applications of microorganisms in Industry, Agriculture and Environment | https://www.aimspress.com/aimsmicro/article/6262/special-articles | 8 |
| Antimicrobials and Resistance | https://www.aimspress.com/aimsmicro/article/6209/special-articles | 5 |
| No. | Article | Citations |
| 1 | Salmonella spp. quorum sensing: an overview from environmental persistence to host cell invasion | 10 |
| 2 | Ways to improve biocides for metalworking fluid | 9 |
| 3 | Yeasts in different types of cheese | 7 |
| 4 | Exploring endophytes for in vitro synthesis of bioactive compounds similar to metabolites produced in vivo by host plants | 7 |
| 5 | Listeria monocytogenes isolates from Western Cape, South Africa exhibit resistance to multiple antibiotics and contradicts certain global resistance patterns | 6 |
