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Research article

Comparative in vitro activity of various antibiotic against planktonic and biofilm and the gene expression profile in Pseudomonas aeruginosa

  • Received: 08 December 2022 Revised: 10 March 2023 Accepted: 13 March 2023 Published: 30 March 2023
  • P. aeruginosa is an opportunistic pathogen that is commonly found in nosocomial infections. The purpose of this study was to investigate the effects of seven antibiotics on P. aeruginosa planktonic growth, biofilm formation, and the expression of virulence factors. These antibiotics included Ciprofloxacin (CP), Amikacin (AMK), Vancomycin (VAN), Tetracycline (TET), Gentamicin (GEN), Erythromycin (Ery), and Clindamycin (CLI). Antibiotic susceptibility testing, Minimum Bactericidal Concentration (MBC), Minimum Inhibitory Concentration (MIC), growth curve, time-kill curve, biofilm inhibition and reduction assay, and RT-qPCR were used to assess the effects of these antibiotics on P. aeruginosa planktonic and biofilm. The clear zones of inhibition against P. aeruginosa for the CP, AMK, VAN, TET, GEN, Ery, and CLI were 26 mm, 20 mm, 21 mm, 22 mm, 20 mm, 25 mm and 23 mm, respectively. The MIC values for CP, AMK, VAN, TET, GEN, Ery and CLI against P. aeruginosa ranged from 0.25 to 1 µg/mL while the MBC values ranged from 1 and 0.5 to 2 µg/mL respectively. The growth, total viable counts (TVCs), bacterial adhesion and biofilm formation of P. aeruginosa were reduced after exposure to all the tested antibiotics in a dose-dependent manner. The RT-qPCR analysis showed that all the tested antibiotics share a similar overall pattern of gene expression, with a trend toward reduced expression of the virulence genes of interest (lasR, lasI, fleN, fleQ and fleR, oprB and oprC) in P. aeruginosa. The results indicate that all of the tested antibiotics possess antimicrobial and anti-biofilm activities, and that they may be multiple inhibitors and moderators of P. aeruginosa virulence via a variety of molecular targets. This deduction requires to be investigated in vivo.

    Citation: Mohammad Abu-Sini, Mohammad A. Al-Kafaween, Rania M. Al-Groom, Abu Bakar Mohd Hilmi. Comparative in vitro activity of various antibiotic against planktonic and biofilm and the gene expression profile in Pseudomonas aeruginosa[J]. AIMS Microbiology, 2023, 9(2): 313-331. doi: 10.3934/microbiol.2023017

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  • P. aeruginosa is an opportunistic pathogen that is commonly found in nosocomial infections. The purpose of this study was to investigate the effects of seven antibiotics on P. aeruginosa planktonic growth, biofilm formation, and the expression of virulence factors. These antibiotics included Ciprofloxacin (CP), Amikacin (AMK), Vancomycin (VAN), Tetracycline (TET), Gentamicin (GEN), Erythromycin (Ery), and Clindamycin (CLI). Antibiotic susceptibility testing, Minimum Bactericidal Concentration (MBC), Minimum Inhibitory Concentration (MIC), growth curve, time-kill curve, biofilm inhibition and reduction assay, and RT-qPCR were used to assess the effects of these antibiotics on P. aeruginosa planktonic and biofilm. The clear zones of inhibition against P. aeruginosa for the CP, AMK, VAN, TET, GEN, Ery, and CLI were 26 mm, 20 mm, 21 mm, 22 mm, 20 mm, 25 mm and 23 mm, respectively. The MIC values for CP, AMK, VAN, TET, GEN, Ery and CLI against P. aeruginosa ranged from 0.25 to 1 µg/mL while the MBC values ranged from 1 and 0.5 to 2 µg/mL respectively. The growth, total viable counts (TVCs), bacterial adhesion and biofilm formation of P. aeruginosa were reduced after exposure to all the tested antibiotics in a dose-dependent manner. The RT-qPCR analysis showed that all the tested antibiotics share a similar overall pattern of gene expression, with a trend toward reduced expression of the virulence genes of interest (lasR, lasI, fleN, fleQ and fleR, oprB and oprC) in P. aeruginosa. The results indicate that all of the tested antibiotics possess antimicrobial and anti-biofilm activities, and that they may be multiple inhibitors and moderators of P. aeruginosa virulence via a variety of molecular targets. This deduction requires to be investigated in vivo.



    Nonlinear partial differential equation is a very important branch of the nonlinear science, which has been called the foreword and hot topic of current scientific development. In theoretical science and practical application, nonlinear partial differential is used to describe the problems in the fields of optics, mechanics, communication, control science and biology [1,2,3,4,5,6,7,8,9]. At present, the main problems in the study of nonlinear partial differential equations are the existence of solutions, the stability of solutions, numerical solutions and exact solutions. With the development of research, especially the study of exact solutions of nonlinear partial differential equations has important theoretical value and application value. In the last half century, many important methods for constructing exact solutions of nonlinear partial differential equations have been proposed, such as the planar dynamic system method [10], the Jacobi elliptic function method [11], the bilinear transformation method [12], the complete discriminant system method for polynomials [13], the unified Riccati equation method [14], the generalized Kudryashov method [15], and so on [16,17,18,19,20,21,22,23,24].

    There is no unified method to obtain the exact solution of nonlinear partial differential equations. Although predecessors have obtained some analytical solutions with different methods, no scholar has studied the system with complete discrimination system for polynomial method.

    The Fokas system is a very important class of nonlinear partial differential equations. In this article, we focus on the Fokas system, which is given as follows [25,26,27,28,29,30,31,32,33,34,35,36,37]

    {ipt+r1pxx+r2pq=0,r3qyr4(|p|2)x=0, (1.1)

    where p=p(x,y,t) and q=q(x,y,t) are the complex functions which stand for the nonlinear pulse propagation in monomode optical fibers. The parameters r1,r2,r3 and r4 are arbitrary non-zero constants, which are coefficients of nonlinear terms in Eq (1.1) and reflect different states of optical solitons.

    This paper is arranged as follows. In Section 2, we describe the method of the complete discrimination system for polynomial method. In Section 3, we substitute traveling wave transformation into nonlinear ordinary differential equations and obtain the different new single traveling wave solutions for the Fokas system by complete discrimination system for polynomial method. At the same time, we draw some images of solutions. In Section 4, the main results are summarized.

    First, we consider the following partial differential equations:

    {F(u,v,ux,ut,vx,vt,uxx,uxt,utt,)=0G(u,v,ux,ut,vx,vt,uxx,uxt,utt,)=0 (2.1)

    where F and G is polynomial function which is about the partial derivatives of each order of u(x,t) and v(x,t) with respect to x and t.

    Step 1: Taking the traveling wave transformation u(x,t)=u(ξ),v(x,t)=v(ξ),ξ=kx+ct into Eq (2.1), then the partial differential equation is converted to an ordinary differential equation

    {F(u,v,u,v,u,v,)=0,G(u,v,u,v,u,v,)=0. (2.2)

    Step 2: The above nonlinear ordinary differential equations (2.2) are reduced to the following ordinary differential form after a series of transformations:

    (u)2=u3+d2u2+d1u+d0. (2.3)

    The Eq (2.3) can also be written in integral form as:

    ±(ξξ0)=duu3+d2u2+d1u+d0. (2.4)

    Step 3: Let ϕ(u)=u3+d2u2+d1u+d0. According to the complete discriminant system method of third-order polynomial

    {Δ=27(2d3227+d0d1d23)24(d1d223)3,D1=d1d223, (2.5)

    the classification of the solution of the equation can be obtained, and the classification of traveling wave solution of the Fokas system will be given in the following section.

    In the current part, we obtain all exact solutions to Eq (1.1) by complete discrimination system for polynomial method. According to the wave transformation

    p(x,y,t)=φ(η)ei(λ1x+λ2y+λ3t+λ4),q(x,y,t)=ϕ(η),η=x+yvt, (3.1)

    where λ1,λ2,λ3,λ4 and v are real parameters, and v represents the wave frame speed.

    Substituting the above transformation Eq (3.1) into Eq (1.1), we get

    {(v+2r1λ1)iφλ3φ+r1φr1λ21φ+r2φϕ=0,r3ϕ2r4φφ=0. (3.2)

    Integrating the second equation in (3.2) and ignoring the integral constant, we get

    ϕ(η)=r4φ2(η)r3. (3.3)

    Substituting Eq (3.3) into the first equation in (3.2) and setting v=2r1λ1, we get the following:

    r1φ(λ3+r1λ21)φ+r2r4φ3r3=0. (3.4)

    Multiplying φ both sides of the Eq (3.4), then integrating once to get

    (φ)2=a4φ4+a2φ2+a0, (3.5)

    where a4=r2r42r1r3,a2=λ3+r1λ21r1, a0 is the arbitrary constant.

    Let  φ=±(4a4)13ω, b1=4a2(4a4)23,b0=4a0(4a4)13,η1=(4a4)13η. (3.6)

    Equation (3.5) can be expressed as the following:

    (ωη1)2=ω3+b1ω2+b0ω. (3.7)

    Then we can get the integral expression of Eq (3.7)

    ±(η1η0)=dωω(ω2+b1ω+b0), (3.8)

    where η0 is the constant of integration.

    Here, we get the F(ω)=ω2+b1ω+b0 and Δ=b214b0. In order to solve Eq (3.7), we discuss the third order polynomial discrimination system in four cases.

    Case 1:Δ=0 and ω>0.

    When b1<0, the solution of Eq (3.7) is

    ω1=b12tanh2(12b12(η1η0)). (3.9)
    ω2=b12coth2(12b12(η1η0)). (3.10)

    Thus, the classification of all solutions of Eq (3.7) is obtained by the third order polynomial discrimination system. The exact traveling wave solutions of the Eq (1.1) are obtained by combining the above solutions and the conditions (3.6) with Eq (3.1), can be expressed as below:

    p1(x,y,t)=±r3(λ3+r1λ21)r2r4tanh(122(λ3+r1λ21)r1(2r2r4r1r3)23((2r2r4r1r3)13η+η0))ei(λ1x+λ2y+λ3t+λ4). (3.11)

    In Eq (3.11), p1(x,y,t) is a dark soliton solution, it expresses the energy depression on a certain intensity background. Figure 1 depict two-dimensional graph, three-dimensional graph, contour plot and density plot of the solution.

    q1(x,y,t)=λ3+r1λ21r2tanh2(122(λ3+r1λ21)r1(2r2r4r1r3)23((2r2r4r1r3)13η+η0)) (3.12)
    p2(x,y,t)=±r3(λ3+r1λ21)r2r4coth(122(λ3+r1λ21)r1(2r2r4r1r3)23((2r2r4r1r3)13η+η0))ei(λ1x+λ2y+λ3t+λ4), (3.13)
    Figure 1.  Module length graphs of Eq (3.12) when r1=2,r2=1,r3=1,r4=1,λ1=1,λ3=3,η0=0.

    where p1(x,y,t),q1(x,y,t),p2(x,y,t),q2(x,y,t) are hyperbolic function solutions. Specially, p2(x,y,t) is a bright soliton solution.

    q2(x,y,t)=λ3+r1λ21r2coth2(122(λ3+r1λ21)r1(2r2r4r1r3)23((2r2r4r1r3)13η+η0)). (3.14)

    When b1>0, the solution of Eq (3.7) is

    ω3=b12tan2(12b12(η1η0)). (3.15)

    The exact traveling wave solutions of the Eq (1.1) can be expressed as below:

    p3(x,y,t)=±r3(λ3+r1λ21)r2r4tan(122(λ3+r1λ21)r1(2r2r4r1r3)23((2r2r4r1r3)13η+η0))ei(λ1x+λ2y+λ3t+λ4). (3.16)
    q3(x,y,t)=λ3+r1λ21r2tan2(122(λ3+r1λ21)r1(2r2r4r1r3)23((2r2r4r1r3)13η+η0)). (3.17)

    In Eq (3.16) and Eq (3.17), p3(x,y,t) and q3(x,y,t) are trigonometric function solutions. q3(x,y,t) is a periodic wave solution, and it Shows the periodicity of q3(x,y,t) in Figure 2(a), (b).

    Figure 2.  Module length graphs of Eq (3.17) when r1=2,r2=1,r3=1,r4=1,λ1=1,λ3=1,η0=0.

    When b1=0, the solution of Eq (3.7) is

    ω4=4(η1η0)2. (3.18)

    The exact traveling wave solutions of the Eq (1.1) can be expressed as below:

    p4(x,y,t)=±(2r2r4r1r3)132(2r2r4r1r3)13η+η0ei(λ1x+λ2y+λ3t+λ4), (3.19)
    q4(x,y,t)=r4r3(2r2r4r1r3)134((2r2r4r1r3)13η+η0)2, (3.20)

    where p4(x,y,t) is exponential function solution, and q4(x,y,t) is rational function solution.

    Case 2: Δ=0 and b0=0.

    When ω>b1 and b1<0, the solution of Eq (3.7) is

    ω5=b12tanh2(12b12(η1η0))b1. (3.21)
    ω6=b12coth2(12b12(η1η0))b1. (3.22)

    The exact traveling wave solutions of the Eq (1.1) can be expressed as below:

    p5(x,y,t)=±r3(λ3+r1λ21)r2r4(tanh2(122(λ3+r1λ21)r1(2r2r4r1r3)23((2r2r4r1r3)13η+η0))2)ei(λ1x+λ2y+λ3t+λ4), (3.23)
    q5(x,y,t)=λ3+r1λ21r2tanh2(122(λ3+r1λ21)r1(2r2r4r1r3)23((2r2r4r1r3)13η+η0))+2(λ3+r1λ21)r2, (3.24)
    p6(x,y,t)=±r3(λ3+r1λ21)r2r4(coth2(122(λ3+r1λ21)r1(2r2r4r1r3)23((2r2r4r1r3)13η+η0))2)ei(λ1x+λ2y+λ3t+λ4), (3.25)
    q6(x,y,t)=λ3+r1λ21r2coth2(122(λ3+r1λ21)r1(2r2r4r1r3)23((2r2r4r1r3)13η+η0))+2(λ3+r1λ21)r2, (3.26)

    where p5(x,y,t),q5(x,y,t),p6(x,y,t) and q6(x,y,t) are hyperbolic function solutions.

    When ω>b1 and b1>0, the solution of Eq (3.7) is

    ω7=b12tan2(12b12(η1η0))b1. (3.27)

    The exact traveling wave solutions of the Eq (1.1) can be expressed as below:

    p7(x,y,t)=±r3(λ3+r1λ21)r2r4(tan2(122(λ3+r1λ21)r1(2r2r4r1r3)23((2r2r4r1r3)13η+η0))+2)ei(λ1x+λ2y+λ3t+λ4), (3.28)
    q7(x,y,t)=λ3+r1λ21r2tan2(122(λ3+r1λ21)r1(2r2r4r1r3)23((2r2r4r1r3)13η+η0))+2(λ3+r1λ21)r2, (3.29)

    where p7(x,y,t) and q7(x,y,t) are trigonometric function solutions.

    Case 3: Δ>0 and b00. Let u<v<s, there u,v and s are constants satisfying one of them is zero and two others are the root of F(ω)=0.

    When u<ω<v, we can get the solution of Eq (3.7) is

    ω8=u+(vu)sn2(su2(η1η0),c), (3.30)

    where c2=vusu.

    The exact traveling wave solutions of the Eq (1.1) can be expressed as below:

    p8(x,y,t)=±(2r2r4r1r3)13[u+(vu)sn2(su2((2r2r4r1r3)13η+η0),c)]ei(λ1x+λ2y+λ3t+λ4). (3.31)
    q8(x,y,t)=r4r3(2r2r4r1r3)13[u+(vu)sn2(su2((2r2r4r1r3)13η+η0),c)]. (3.32)

    When ω>s, the solution of Eq (3.7) is

    ω9=vsn2(su(η1η0)/2,c)+scn2(su(η1η0)/2,c). (3.33)

    The exact traveling wave solutions of the Eq (1.1) can be expressed as below:

    p9(x,y,t)=±(2r2r4r1r3)13vsn2(su2((2r2r4r1r3)13η+η0),c)]+scn2(su2((2r2r4r1r3)13η+η0),c)ei(λ1x+λ2y+λ3t+λ4). (3.34)
    q9(x,y,t)=r4r3(2r2r4r1r3)13vsn2(su2((2r2r4r1r3)13η+η0),c)]+scn2(su2((2r2r4r1r3)13η+η0),c). (3.35)

    Case 4: Δ<0.

    When ω>0, similarly we get

    ω10=2b01+cn(b140(η1η0),c)b0, (3.36)

    where c2=(1b1b02)/2.

    The exact traveling wave solutions of the Eq (1.1) can be expressed as below:

    p10(x,y,t)=±2a0(2r2r4r1r3)12[21+cn((4a0(2r2r4r1r3)13)14((2r2r4r1r3)13η+η0),c)+1]ei(λ1x+λ2y+λ3t+λ4), (3.37)
    q10(x,y,t)=r4r32a0(2r2r4r1r3)12[21+cn((4a0(2r2r4r1r3)13)14((2r2r4r1r3)13η+η0),c)+1], (3.38)

    where p8(x,y,t),q8(x,y,t),p9(x,y,t),q9(x,y,t),p10(x,y,t) and q10(x,y,t) are Jacobian elliptic function solutions.

    In this paper, the complete discrimination system of polynomial method has been applied to construct the single traveling wave solutions of the Fokas system. The Jacobian elliptic function solutions, the trigonometric function solutions, the hyperbolic function solutions and the rational function solutions are obtained. The obtained solutions are very rich, which can help physicists understand the propagation of traveling wave in monomode optical fibers. Furthermore, we have also depicted two-dimensional graphs, three-dimensional graphs, contour plots and density plots of the solutions of Fokas system, which explains the state of solitons from different angles.

    This work was supported by Scientific Research Funds of Chengdu University (Grant No.2081920034).

    The authors declare no conflict of interest.


    Acknowledgments



    This work was supported by Al-Zaytoonah University of Jordan (Grant Number: 2019-2018/18/09) and Universiti Sultan Zainal Abidin (UniSZA) (UniSZA/2018/DPU/13:R0034-R013). The authors thank all the staff members of the Faculty of Pharmacy at Al-Zaytoonah University of Jordan and the Faculty of Health Sciences at UniSZA for their support and commitment.

    Conflict of interest



    The authors declare that there is no conflict of interest.

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