- RIS(for EndNote,Reference Manager,ProCite)
- Citation Only
- Citation and Abstract
Microbiome in the urinary system—a review
National Security and Intelligence, Noblis, Reston, VA, USA
Received: , Accepted: , Published:
Citation: Jane Tang. Microbiome in the urinary system—a review. AIMS Microbiology, 2017, 3(2): 143-154. doi: 10.3934/microbiol.2017.2.143
- 1. Human Microbiome Project Consortium, Structure, function and diversity of the healthy human microbiome, 2012. Available from: https://www.ncbi.nlm.nih.gov/pubmed/22699609.
- 2. Cho I, Blaser MJ (2012) The human microbiome: at the interface of health and disease. Nat Rev Genet 13: 260-270.
- 3. Grice EA, Segre JA (2012) The human microbiome: our second genome. Annu Rev Genomics Hum Genet 13: 151-170.
- 4. Thomas-White K, Brady M, Wolfe AJ, et al. (2016) The bladder is not sterile: History and current discoveries on the urinary microbiome. Curr Bladder Dysfunct Rep 11: 18-24.
- 5. Whiteside SA, Razvi H, Dave S, et al. (2015) The microbiome of the urinary tract-a role beyond infection. Nat Rev Urol 12: 81-90.
- 6. J Craig Ventor Institute, Asymptomatic bacteriuria: Microbiome and metaproteome, 2016. Available from: http://www.jcvi.org/cms/research/projects/asymptomatic-bacteriuria-microbiome-and-metaproteome.
- 7. Vollmar A (2016) The urinary tract's microbiome. Midwifery Matters Winter: 26.
- 8. Wolfe AJ, Brubaker L (2015) "Sterile urine" and the presence of bacteria. Eur Urol 68: 173-174.
- 9. Lewis DA, Brown R, Williams J, et al. (2013) The human urinary microbiome; bacterial DNA in voided urine of asymptomatic adults. Front Cell Infect Microbiol 3: 41.
- 10. Hilt EE, McKinley K, Pearce MM, et al. (2014) Urine is not sterile: use of enhanced urine culture techniques to detect resident bacterial flora in the adult female bladder. J Clin Microbiol 52: 871-876.
- 11. Brubaker L, Wolfe AJ (2015) The new world of the urinary microbiota in women. Am J Obstet Gynecol 213: 644-649.
- 12. Wolfe AJ, Toh E, Shibata N, et al. (2012) Evidence of uncultivated bacteria in the adult female bladder. J Clin Microbiol 50: 1383.
- 13. Ipe DS, Horton E, Ulett GC (2016) The Basics of bacteriuria: strategies of microbes for persistence in urine. Front Cell Infect Microbiol 6: 14.
- 14. Pearce MM, Zilliox MJ, Rosenfeld AB, et al. (2015) The female urinary microbiome in urgency urinary incontinence. Am J Obstet Gynecol 213: 347-e1.
- 15. Cadieux PA, Burton J, Devillard E, et al. (2009) Lactobacillus by-products inhibit the growth and virulence of uropathogenic Escherichia coli. J Physiol Pharmacol 60 (Suppl 6): 13–18.
- 16. Schreckenberger P (2014) Reporting: more than meets the eye- the urine microbiome. ISM Fall Meeting.
- 17. Khasriya R, Sathiananthamoorthy S, Ismail S, et al. (2013) Spectrum of bacterial colonization associated with urothelial cells from patients with chronic lower urinary tract symptoms. J Clin Microbio 51: 2054-2062.
- 18. Pearce MM, Hilt EE, Rosenfeld AB, et al. (2014) The female urinary microbiome: a comparison of women with and without urgency urinary incontinence. MBio 5: e01283-01214.
- 19. Price TK, Dune T, Hilt EE, et al. (2016) The clinical urine culture: enhanced techniques improve detection of clinically relevant microorganisms. J Clin Microbiol 54: 1216-1222.
- 20. Thomas-White KJ, Hilt EE, Fok C, et al. (2016) Incontinence medication response relates to the female urinary microbiota. Int Urogynecol J 27: 723-733.
- 21. Ipe DS, Sundac L, Benjamin WH, et al. (2013) Asymptomatic bacteriuria: prevalence rates of causal microorganisms, etiology of infection in different patient populations, and recent advances in molecular detection. FEMS Microbiol Lett 346: 1-10.
- 22. Kok DJ, Maghdid DM, Erasmus MC (2016) Relations to urinary tract infection, hormonal status, gender and age. 17th International EAUN Meeting, Munich, Germany.
- 23. Nelson DE, Dong Q, Van Der Pol B, et al. (2012) Bacterial Communities of the coronal sulcus and distal urethra of adolescent males. PLoS One 7: e36298.
- 24. Fouts DE, Pieper R, Szpakowski S, et. al. (2012) Intergrated next-generation sequencing for 16S rDNA and metaproteomics differentiate the healthy urine microbioime from asymptomatic bacteriuria in neuropathic bladder associated with spinal cord injury. J Trans Med 10: 174.
- 25. Karstens L, Asquith M, Davin S, et al. (2016) Does the urinary microbiome play a role in urgency urinary incontience and its severity. Frontiers in Cell Infect Microbiol 76: 1-13.
- 26. Chen S, Dong X (2005) Proteiniphilum acetatigenes gen. nov., sp. nov., from a UASB reactor treating brewery wastewater. Int J Syst Evol Microbiol 55: 2257-2261.
- 27. Jumas-Bilak E, Carlier JP, Jean-Pierre H, et al. (2007) Jonquetella anthropi gen. nov., sp. nov., the first member of the candidate phylum 'Synergistetes' isolated from man. Int J Syst Evol Microbiol 57: 2743-2748.
- 28. Uemura H, Hayakawa K, Shimada K, et al. (2014) Parvimonas micra as a causative organism of spondylodiscitis: a report of two cases and a literature review. Int J Infect Dis 23: 53-55.
- 29. Chen S, Niu L, Zhang Y (2010) Saccharofermentans acetigenes gen. nov., sp. nov., an anaerobic bacterium isolated from sludge treating brewery wastewater. Int J Syst Evol Microbiol 60: 2735-2738.
- 30. Beerepoot MA, ter Riet G, Nys S, et al. (2012) Lactobacilli vs antibiotics to prevent urinary tract infections: a randomized, double-blind, noninferiority trial in postmenopausal women. Arch Intern Med 172: 704-712.
- 31. Bao Y, Welk B, Reid G, et al. (2014) Role of the microbiome in recurrent urinary tract infection, In: Matsumoto, T. Author, Novel Insights into Urinary Tract Infections and their Management, London: Future Medicine Ltd, 48–59.
- 32. Horwitz D, McCue T, Mapes AC, et al. (2015) Decreased microbiota diversity associated with urinary tract infection in a trial of bacterial interference. J Infect 71: 358-367.
- 33. Siener R, Bangen U, Sidhu H, et al. (2013) The role of Oxalobacter formigenes colonization in calcium oxalate stone disease. Kidney Int 83: 1144-1149.
- 34. Jiang J, Knight J, Easter LH, et al. (2011) Impact of dietary calcium and oxalate, and Oxalobacter formigenes colonization on urinary oxalate excretion. J Urol 186: 135-139.
- 35. Dwyer ME, Krambeck AE, Bergstralh EJ, et al. (2012) Temporal trends in incidence of kidney stones among children: a 25-year population based study. J Urol 188: 247-252.
- 36. National Institute of Diabetes and Digestive and Kidney Diseases, Urinary Tract Infection in Adults, 2012. Available from: https://www.niddk.nih.gov/health-information/urologic-diseases/urinary-tract-infections-utis.
- 37. American Urological Association, Adult UTI, 2016. Available from: https://www.auanet.org/education/adult-uti.cfm.
- 38. Huang M, Tang JT (2015) Probiotics in personal care products. Microbiol Discov 3: 1-9.
- 39. National Institute of Diabetes and Digestive and Kidney Diseases, Kidney Stones in Adults, 2013. Available from: https://www.niddk.nih.gov/health-information/health-topics/ urologic-disease/kidney-stones-in-adults/Pages/facts.aspx.
- 40. Barnett C, Nazzal L, Goldfarb DS, et al. (2016) The presence of Oxalobacter formigenes in the microbiome of healthy young adults. J Urol 195: 499-506.
- 41. Knight J, Deora R, Assimos DG, et al. (2013) The genetic composition of Oxalobacter formigenes and its relationship to colonization and calcium oxalate stone disease. Urolithiasis 41: 187-196.
- 42. Barr-Beare E, Saxena V, Hilt EE, et al. (2015) The interaction between Enterobacteriaceae and calcium oxalate deposits. PLoS One 10: e0139575.
- 43. Xu W, Yang L, Lee P, et al. (2014) Mini-review: perspective of the microbiome in the pathogenesis of urothelial carcinoma. Am J Clin Exp Urol 2: 57-61.
- 44. Hurwitz M, Spiess PE, Garcia JA, et al. Urothelial Cancer, 2016. Available from: http://www.cancernetwork.com/cancer-management/urothelial-and-kidney-cancers.
- 45. The White House Office of Science and Technology Policy (2016) Fact Sheet: Announcing the National Microbiome Initiative. Available from: https://obamawhitehouse.archives.gov/the-press-office/2016/05/12/fact-sheet-announcing-national-microbiome-initiative.
your name: * your email: *
Copyright Info: © 2017, Jane Tang, licensee AIMS Press. This is an open access article distributed under the terms of the Creative Commons Attribution Licese (http://creativecommons.org/licenses/by/4.0)