Search Advanced

AIMS Microbiology

2026, Volume 12, Issue 1: 150-172. doi: 10.3934/microbiol.2026006
Previous Article Next Article
Review

Climate-driven restructuring of sediment microbiomes and ecosystem functions in aquaculture systems

  • 1.
    Laboratory of Anatomy and Physiology of Farm Animals, Department of Animal Science, School of Animal Biosciences, Agricultural University of Athens, 75 Iera Odos Str., 11855 Athens, Greece
  • 2.
    Norwegian College of Fishery Science, Faculty of Biosciences, Fisheries and Economics, UiT, The Arctic University of Norway, Tromsø, Norway
  • 3.
    Institute for Fundamental Biomedical Research, Biomedical Sciences Research Center “Alexander Fleming”, Fleming 34, 16672 Vari, Greece
  • Published: 30 March 2026

  • Aquaculture expansion is occurring under accelerating climatic pressure. Warming, marine heatwaves, deoxygenation, salinity fluctuation, and intensified nutrient loading act simultaneously in aquaculture sediments, altering redox gradients and substrate fluxes that structure microbial communities. These stressors strengthen deterministic environmental filtering, reorganize interaction networks toward reduced-state dominance, and redistribute functional investment within sediment microbiomes; the biogeochemical engines regulating nutrient cycling, water quality, and disease dynamics. Such restructuring is associated with altered nitrogen processing, modified greenhouse gas fluxes, sulfide accumulation, enhanced pathogen performance, and enrichment of antimicrobial resistance determinants, with direct implications for production stability and disease risk. Evidence is synthesized to integrate quantified environmental forcing, ecological assembly mechanisms, and molecular functional responses into a unified framework linking microbial restructuring to ecosystem performance and operational resilience. Structural and functional microbial indicators suitable for early detection of redox compression and functional destabilization are evaluated, alongside resilience-oriented strategies spanning ecological design, microbiome management, engineering control, and adaptive monitoring. Despite substantial empirical progress, major gaps remain in resolving compound-stressor interactions, temporal reversibility, cross-system threshold comparability, and predictive modeling of microbial assembly under multi-driver forcing. Addressing these gaps is essential for developing mechanistically grounded, climate-resilient aquaculture systems.

    Citation: Antonia Mataragka, Einar Ringø, Anastasios Klavdianos Papastathis. Climate-driven restructuring of sediment microbiomes and ecosystem functions in aquaculture systems[J]. AIMS Microbiology, 2026, 12(1): 150-172. doi: 10.3934/microbiol.2026006

    Related Papers:

  • Aquaculture expansion is occurring under accelerating climatic pressure. Warming, marine heatwaves, deoxygenation, salinity fluctuation, and intensified nutrient loading act simultaneously in aquaculture sediments, altering redox gradients and substrate fluxes that structure microbial communities. These stressors strengthen deterministic environmental filtering, reorganize interaction networks toward reduced-state dominance, and redistribute functional investment within sediment microbiomes; the biogeochemical engines regulating nutrient cycling, water quality, and disease dynamics. Such restructuring is associated with altered nitrogen processing, modified greenhouse gas fluxes, sulfide accumulation, enhanced pathogen performance, and enrichment of antimicrobial resistance determinants, with direct implications for production stability and disease risk. Evidence is synthesized to integrate quantified environmental forcing, ecological assembly mechanisms, and molecular functional responses into a unified framework linking microbial restructuring to ecosystem performance and operational resilience. Structural and functional microbial indicators suitable for early detection of redox compression and functional destabilization are evaluated, alongside resilience-oriented strategies spanning ecological design, microbiome management, engineering control, and adaptive monitoring. Despite substantial empirical progress, major gaps remain in resolving compound-stressor interactions, temporal reversibility, cross-system threshold comparability, and predictive modeling of microbial assembly under multi-driver forcing. Addressing these gaps is essential for developing mechanistically grounded, climate-resilient aquaculture systems.



    加载中


    Author contributions


    Conceptualization, A.M.; data analyses, A.M. and A.K.P.; writing—original draft preparation, A.M. and A.K.P.; writing—review editing, A.M., E.R and A.K.P.; visualization, A.M., E.R and A.K.P; supervision, A.M. and E.R.; project administration, A.M and E.R. All authors have read and agreed to the published version of the manuscript.

    Conflicts of interest


    All authors declare no conflicts of interest in this paper.

    [1] Food and Agriculture Organization of the United Nations (FAO)The State of World Fisheries and Aquaculture 2024—Blue Transformation in action (2024). https://doi.org/10.4060/cd0683en
    [2] Frölicher TL, Fischer EM, Gruber N (2018) Marine heatwaves under global warming. Nature 560: 360-364. https://doi.org/10.1038/s41586-018-0383-9
    [3] Woolway RI, Albergel C, Frölicher TL, et al. (2022) Severe lake heatwaves attributable to human-induced global warming. Geophys Res Lett 49: e2021GL097031. https://doi.org/10.1029/2021GL097031
    [4] Breitburg D, Levin LA, Oschlies A, et al. (2018) Declining oxygen in the global ocean and coastal waters. Science 359: eaam7240. https://doi.org/10.1126/science.aam7240
    [5] Wang Y, Sheng HF, He Y, et al. (2012) Comparison of the levels of bacterial diversity in freshwater, intertidal wetland, and marine sediments by using millions of illumina tags. Appl Environ Microbiol 78: 8264-8271. https://doi.org/10.1128/AEM.01821-12
    [6] Holmer M, Kristensen E (1996) Seasonality of sulfate reduction and pore water solutes in a marine fish farm sediment: The importance of temperature and sedimentary organic matter. Biogeochemistry 32: 15-39. https://doi.org/10.1007/BF00001530
    [7] Liu Z, Li J, Luo L, et al. (2025) Regime shifts in microbial and water quality dynamics in red tilapia ponds. Microorganisms 13: 1553. https://doi.org/10.3390/microorganisms13071553
    [8] Jansson JK, Hofmockel KS (2020) Soil microbiomes and climate change. Nat Rev Microbiol 18: 35-46. https://doi.org/10.1038/s41579-019-0265-7
    [9] Wasmund K, Mußmann M, Loy A (2017) The life sulfuric: Microbial ecology of sulfur cycling in marine sediments. Environ Microbiol Rep 9: 323-344. https://doi.org/10.1111/1758-2229.12538
    [10] Anantharaman K, Hausmann B, Jungbluth SP, et al. (2018) Expanded diversity of microbial groups that shape the dissimilatory sulfur cycle. ISME J 12: 1715-1728. https://doi.org/10.1038/s41396-018-0078-0
    [11] Dai Z, Yu M, Chen H, et al. (2020) Elevated temperature shifts soil N cycling from microbial immobilization to enhanced mineralization, nitrification and denitrification across global terrestrial ecosystems. Glob Change Biol 26: 5267-5276. https://doi.org/10.1111/gcb.15211
    [12] Lü W, Ren H, Ding W, et al. (2023) Rapid shifts in pond sediment microbiota in response to high ambient temperature in a water-sediment microcosm. Environ Sci Pollut Res Int 30: 74358-74371. https://doi.org/10.1007/s11356-023-26823-7
    [13] Yang P, Tang KW, Tong C, et al. (2022) Changes in sediment methanogenic archaea community structure and methane production potential following conversion of coastal marsh to aquaculture ponds. Environ Pollut 305: 119276. https://doi.org/10.1016/j.envpol.2022.119276
    [14] Zhao Z, Wang J, Han Y, et al. (2017) Nutrients, heavy metals and microbial communities co-driven distribution of antibiotic resistance genes in adjacent environment of mariculture. Environ Pollut 220: 909-918. https://doi.org/10.1016/j.envpol.2016.10.075
    [15] Vezzulli L, Grande C, Reid PC, et al. (2016) Climate influence on Vibrio and associated human diseases during the past half-century in the coastal North Atlantic. Proc Natl Acad Sci USA 113: E5062-E5071. https://doi.org/10.1073/pnas.1609157113
    [16] Hendriksen RS, Munk P, Njage P, et al. (2019) Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage. Nat Commun 10: 1124. https://doi.org/10.1038/s41467-019-08853-3
    [17] Stewart FJ, Dmytrenko O, Delong EF, et al. (2011) Metatranscriptomic analysis of sulfur oxidation genes in the endosymbiont of solemya velum. Front Microbiol 2: 134. https://doi.org/10.3389/fmicb.2011.00134
    [18] Murphy AE, Anderson IC, Smyth AR, et al. (2016) Microbial nitrogen processing in hard clam (Mercenaria mercenaria) aquaculture sediments: The relative importance of denitrification and dissimilatory nitrate reduction to ammonium (DNRA). Limnol Oceanogr 61: 1589-1604. https://doi.org/10.1002/lno.10305
    [19] Lambert S, Tragin M, Lozano JC, et al. (2019) Rhythmicity of coastal marine picoeukaryotes, bacteria and archaea despite irregular environmental perturbations. ISME J 13: 388-401. https://doi.org/10.1038/s41396-018-0281-z
    [20] Holmer M, Duarte CM, Heilskov A, et al. (2003) Biogeochemical conditions in sediments enriched by organic matter from net-pen fish farms in the Bolinao area, Philippines. Mar Pollut Bull 46: 1470-1479. https://doi.org/10.1016/S0025-326X(03)00281-9
    [21] Seidel L, Broman E, Turner S, et al. (2021) Interplay between eutrophication and climate warming on bacterial communities in coastal sediments differs depending on water depth and oxygen history. Sci Rep 11: 23384. https://doi.org/10.1038/s41598-021-02725-x
    [22] Seidel L, Broman E, Nilsson E, et al. (2023) Climate change-related warming reduces thermal sensitivity and modifies metabolic activity of coastal benthic bacterial communities. ISME J 17: 855-869. https://doi.org/10.1038/s41396-023-01395-z
    [23] Asami H, Aida M, Watanabe K (2005) Accelerated sulfur cycle in coastal marine sediment beneath areas of intensive shellfish aquaculture. Appl Environ Microbiol 71: 2925-2933. https://doi.org/10.1128/AEM.71.6.2925-2933.2005
    [24] Deng Y, Mao C, Lin Z, et al. (2022) Nutrients, temperature, and oxygen mediate microbial antibiotic resistance in sea bass (Lateolabrax maculatus) ponds. Sci Total Environ 819: 153120. https://doi.org/10.1016/j.scitotenv.2022.153120
    [25] Obirikorang KA, Acheampong JN, Duodu CP, et al. (2020) Growth, metabolism and respiration in Nile tilapia (Oreochromis niloticus) exposed to chronic or periodic hypoxia. Comp Biochem Physiol A Mol Integr Physiol 248: 110768. https://doi.org/10.1016/j.cbpa.2020.110768
    [26] Broman E, Sachpazidou V, Pinhassi J, et al. (2017) Oxygenation of hypoxic coastal Baltic Sea sediments impacts on chemistry, microbial community composition, and metabolism. Front Microbiol 8: 2453. https://doi.org/10.3389/fmicb.2017.02453
    [27] Robinson G, Caldwell GS, Wade MJ, et al. (2016) Profiling bacterial communities associated with sediment-based aquaculture bioremediation systems under contrasting redox regimes. Sci Rep 6: 38850. https://doi.org/10.1038/srep38850
    [28] Debnath SC, Chaput DL, McMurtrie J, et al. (2025) Seasonal dynamics and factors shaping microbiomes in freshwater finfish earthen aquaculture ponds in Bangladesh. Environ Microbiome 20: 38. https://doi.org/10.1186/s40793-025-00687-5
    [29] Barberán A, Bates ST, Casamayor EO, et al. (2012) Using network analysis to explore co-occurrence patterns in soil microbial communities. ISME J 6: 343-351. https://doi.org/10.1038/ismej.2011.119
    [30] Waite DW, Vanwonterghem I, Rinke C, et al. (2017) Comparative genomic analysis of the class Epsilonproteobacteria and proposed reclassification to Epsilonbacteraeota (phyl. nov.). Front Microbiol 8: 682. https://doi.org/10.3389/fmicb.2017.00682
    [31] Yang W, Zheng C, Zheng Z, et al. (2018) Nutrient enrichment during shrimp cultivation alters bacterioplankton assemblies and destroys community stability. Ecotoxicol Environ Saf 156: 366-374. https://doi.org/10.1016/j.ecoenv.2018.03.043
    [32] Seidel L, Ketzer M, Broman E, et al. (2022) Weakened resilience of benthic microbial communities in the face of climate change. ISME Commun 2: 21. https://doi.org/10.1038/s43705-022-00104-9
    [33] Wang M, Peñuelas J, Sardans J, et al. (2025) Conversion of coastal marsh to aquaculture ponds decreased the potential of methane production by altering soil chemical properties and methanogenic archaea community structure. Water Res 268: 122608. https://doi.org/10.1016/j.watres.2024.122608
    [34] Mugwanya M, Dawood MAO, Kimera F, et al. (2022) Anthropogenic temperature fluctuations and their effect on aquaculture: A comprehensive review. Aquac Fish 7: 223-243. https://doi.org/10.1016/j.aaf.2021.12.005
    [35] Stegen JC, Lin X, Konopka AE, et al. (2012) Stochastic and deterministic assembly processes in subsurface microbial communities. ISME J 6: 1653-1664. https://doi.org/10.1038/ismej.2012.22
    [36] Dini-Andreote F, Stegen JC, van Elsas JD, et al. (2015) Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession. Proc Natl Acad Sci USA 112: E1326-E1332. https://doi.org/10.1073/pnas.1414261112
    [37] Pelikan C, Wasmund K, Glombitza C, et al. (2021) Anaerobic bacterial degradation of protein and lipid macromolecules in subarctic marine sediment. ISME J 15: 833-847. https://doi.org/10.1038/s41396-020-00817-6
    [38] Xun W, Li W, Xiong W, et al. (2019) Diversity-triggered deterministic bacterial assembly constrains community functions. Nat Commun 10: 3833. https://doi.org/10.1038/s41467-019-11787-5
    [39] Knight CG, Nicolitch O, Griffiths RI, et al. (2024) Soil microbiomes show consistent and predictable responses to extreme events. Nature 636: 690-696. https://doi.org/10.1038/s41586-024-08185-3
    [40] Fan L, Barry K, Shi L, et al. (2018) Archaeal community compositions in tilapia pond systems and their influencing factors. World J Microbiol Biotechnol 34: 43. https://doi.org/10.1007/s11274-018-2412-0
    [41] Gao Y, Cornwell JC, Stoecker DK, et al. (2014) Influence of cyanobacteria blooms on sediment biogeochemistry and nutrient fluxes. Limnol Oceanogr 59: 959-971. https://doi.org/10.4319/lo.2014.59.3.0959
    [42] Xu M, Xu R, Shen X, et al. (2021) The response of sediment microbial communities to temporal and site-specific variations of pollution in interconnected aquaculture pond and ditch systems. Sci Total Environ 806: 150498. https://doi.org/10.1016/j.scitotenv.2021.150498
    [43] Hrabar J, Babić I, Jozić S, et al. (2025) Prospecting microbiota of Adriatic fish: Bacillus velezensis as a potential probiotic candidate. Anim Microbiome 7: 64. https://doi.org/10.1186/s42523-025-00429-5
    [44] Chen Y, Dong S, Wang F, et al. (2016) Carbon dioxide and methane fluxes from feeding and no-feeding mariculture ponds. Environ Pollut 212: 489-497. https://doi.org/10.1016/j.envpol.2016.02.039
    [45] Jamal MT, Broom M, Al-Mur BA, et al. (2020) Biofloc technology: Emerging microbial biotechnology for the improvement of aquaculture productivity. Pol J Microbiol 69: 401-409. https://doi.org/10.33073/pjm-2020-049
    [46] Hou D, Zhou R, Zeng S, et al. (2021) Stochastic processes shape the bacterial community assembly in shrimp cultural pond sediments. Appl Microbiol Biotechnol 105: 5013-5022. https://doi.org/10.1007/s00253-021-11378-9
    [47] Han C, Song S, Cui C, et al. (2024) Strain-specific benefits of Bacillus probiotics in hybrid grouper: Growth enhancement, metabolic health, immune modulation, and Vibrio harveyi resistance. Animals (Basel) 14: 1062. https://doi.org/10.3390/ani14071062
    [48] Brislawn CJ, Graham EB, Dana K, et al. (2019) Forfeiting the priority effect: Turnover defines biofilm community succession. ISME J 13: 1865-1877. https://doi.org/10.1038/s41396-019-0396-x
    [49] Birgander J, Reischke S, Jones DL, et al. (2013) Temperature adaptation of bacterial growth and 14C-glucose mineralisation in a laboratory study. Soil Biol Biochem 65: 294-303. https://doi.org/10.1016/j.soilbio.2013.06.006
    [50] Ostrzinski A, Kunath BJ, Soares AR, et al. (2025) Systematic evaluation of protein extraction for metaproteomic analysis of marine sediment with high clay content. ISME Commun 5: ycaf074. https://doi.org/10.1093/ismeco/ycaf074
    [51] Escobar-Sierra C, de Kock W, Hasler-Sheetal H, et al. (2023) Metabolomics unravels grazing interactions under nutrient enrichment from aquaculture. Diversity 15: 31. https://doi.org/10.3390/d15010031
    [52] Asnicar D, Jonah L, de Jourdan B, et al. (2025) Exploring cumulative effects of aquaculture chemicals in sediment on adult sea urchin behavioral, immunological, and metabolomic endpoints. Environ Toxicol Chem 44: 1686-1695. https://doi.org/10.1093/etojnl/vgaf080
    [53] Seiler C, Berendonk TU (2012) Heavy metal driven co-selection of antibiotic resistance in soil and water bodies impacted by agriculture and aquaculture. Front Microbiol 3: 399. https://doi.org/10.3389/fmicb.2012.00399
    [54] Chen SW, Liu CH, Hu SY (2019) Dietary administration of probiotic Paenibacillus ehimensis NPUST1 with bacteriocin-like activity improves growth performance and immunity against Aeromonas hydrophila and Streptococcus iniae in Nile tilapia (Oreochromis niloticus). Fish Shellfish Immunol 84: 695-703. https://doi.org/10.1016/j.fsi.2018.10.059
    [55] Khanjani MH, Zahedi S, Mohammadi A (2022) Integrated multitrophic aquaculture (IMTA) as an environmentally friendly system for sustainable aquaculture: functionality, species, and application of biofloc technology (BFT). Environ Sci Pollut Res Int 29: 67513-67531. https://doi.org/10.1007/s11356-022-22371-8
    [56] Johnson JE, Welch DJ (2010) Marine fisheries management in a changing climate: A review of vulnerability and future options. Rev Fish Sci Aquac 18: 106-124. https://doi.org/10.1080/10641260903434557
    [57] Yuan SY, Zhu WJ, Neori A, et al. (2023) Benthic suspension-feeding clams affect sedimentary microbial communities and nitrogen cycling in seawater pond IMTA. Aquaculture 563: 738907. https://doi.org/10.1016/j.aquaculture.2022.738907
    [58] Aubin J, Callier M, Rey-Valette H, et al. (2019) Implementing ecological intensification in fish farming: Definition and principles from contrasting experiences. Rev Aquac 11: 149-167. https://doi.org/10.1111/raq.12231
    [59] Yang Q, Yan Y, Huang J, et al. (2023) The impact of warming on assembly processes and diversity patterns of bacterial communities in mesocosms. Microorganisms 11: 2807. https://doi.org/10.3390/microorganisms11112807
    [60] van Duc L, Song B, Ito H, et al. (2018) High growth potential and nitrogen removal performance of marine anammox bacteria in shrimp-aquaculture sediment. Chemosphere 196: 69-77. https://doi.org/10.1016/j.chemosphere.2017.12.159
    [61] Lefevre S, Huong doTT, Wang T, et al. (2011) Hypoxia tolerance and partitioning of bimodal respiration in the striped catfish (Pangasianodon hypophthalmus). Comp Biochem Physiol A Mol Integr Physiol 158: 207-214. https://doi.org/10.1016/j.cbpa.2010.10.029
    [62] Kayansamruaj P, Pirarat N, Hirono I, et al. (2014) Increasing of temperature induces pathogenicity of Streptococcus agalactiae and the up-regulation of inflammatory related genes in infected Nile tilapia (Oreochromis niloticus). Vet Microbiol 172: 265-271. https://doi.org/10.1016/j.vetmic.2014.04.013
    [63] Korkea-aho TL, Heikkinen J, Thompson KD, et al. (2011) Pseudomonas sp. M174 inhibits the fish pathogen Flavobacterium psychrophilum. J Appl Microbiol 111: 266-277. https://doi.org/10.1111/j.1365-2672.2011.05044.x
    [64] Huisman J, Codd GA, Paerl HW, et al. (2018) Cyanobacterial blooms. Nat Rev Microbiol 16: 471-483. https://doi.org/10.1038/s41579-018-0040-1
    [65] Smucker NJ, Beaulieu JJ, Nietch CT, et al. (2021) Increasingly severe cyanobacterial blooms and deep water hypoxia coincide with warming water temperatures in reservoirs. Glob Change Biol 27: 2507-2519. https://doi.org/10.1111/gcb.15618
    [66] Froehlich HE, Runge CA, Gentry RR, et al. (2018) Comparative terrestrial feed and land use of an aquaculture-dominant world. Proc Natl Acad Sci USA 115: 5295-5300. https://doi.org/10.1073/pnas.1801692115
    [67] MacFadden DR, McGough SF, Fisman D, et al. (2018) Antibiotic resistance increases with local temperature. Nat Clim Change 8: 510-514. https://doi.org/10.1038/s41558-018-0161-6
    [68] Su Z, Li Y, Pan L, et al. (2016) An investigation on the immunoassays of an ammonia nitrogen-degrading bacterial strain in aquatic water. Aquaculture 450: 17-22. https://doi.org/10.1016/j.aquaculture.2015.07.001
    [69] Dyksma S, Bischof K, Fuchs BM, et al. (2016) Ubiquitous Gammaproteobacteria dominate dark carbon fixation in coastal sediments. ISME J 10: 1939-1953. https://doi.org/10.1038/ismej.2015.257
    [70] Bryukhanov AL, Bryukhanov AL, Vlasova MA, et al. (2018) Phylogenetic diversity of the sulfur cycle bacteria in the bottom sediments of the Chersonesus Bay. Microbiology 87: 372-381. https://doi.org/10.1134/S0026261718030025
    [71] Zeng S, Wei D, Hou D, et al. (2021) Sediment microbiota in polyculture of shrimp and fish pattern is distinctive from those in monoculture intensive shrimp or fish ponds. Sci Total Environ 787: 147594. https://doi.org/10.1016/j.scitotenv.2021.147594
    [72] Kuypers MMM, Marchant HK, Kartal B (2018) The microbial nitrogen-cycling network. Nat Rev Microbiol 16: 263-276. https://doi.org/10.1038/nrmicro.2018.9
    [73] Hindson BJ, Ness KD, Masquelier DA, et al. (2011) High-throughput droplet digital PCR system for absolute quantitation of DNA copy number. Anal Chem 83: 8604-8610. https://doi.org/10.1021/ac202028g
    [74] Troell M, Joyce A, Chopin T, et al. (2009) Ecological engineering in aquaculture—Potential for integrated multi-trophic aquaculture (IMTA) in marine offshore systems. Aquaculture 297: 1-9. https://doi.org/10.1016/j.aquaculture.2009.09.010
    [75] Henriksson PJG, Belton B, Murshed-E-Jahan K, et al. (2018) Measuring the potential for sustainable intensification of aquaculture in Bangladesh using life cycle assessment. Proc Natl Acad Sci USA 115: 2958-2963. https://doi.org/10.1073/pnas.1716530115
    [76] Béné C, Arthur R, Norbury H, et al. (2016) Contribution of fisheries and aquaculture to food security and poverty reduction: assessing the current evidence. World Dev 79: 177-196. https://doi.org/10.1016/j.worlddev.2015.11.007
    [77] Martínez-Córdova LR, Emerenciano M, Miranda-Baeza A, et al. (2015) Microbial-based systems for aquaculture of fish and shrimp: an updated review. Rev Aquac 7: 131-148. https://doi.org/10.1111/raq.12058
    [78] Azim ME, Little DC (2008) The biofloc technology (BFT) in indoor tanks: Water quality, biofloc composition, and growth and welfare of Nile tilapia (Oreochromis niloticus). Aquaculture 283: 29-35. https://doi.org/10.1016/j.aquaculture.2008.06.036
    [79] Ringø E, Van Doan H, Lee SH, et al. (2020) Probiotics, lactic acid bacteria and bacilli: Interesting supplementation for aquaculture. J Appl Microbiol 129: 116-136. https://doi.org/10.1111/jam.14628
    [80] Goh JXH, Tan LTH, Law JWF, et al. (2024) Streptomyces sp. MUM 195J: A promising probiotic for controlling Vibrio parahaemolyticus infection in aquaculture. Prog Microbes Mol Biol 7: a0000443. https://doi.org/10.36877/pmmb.a0000443
    [81] Soltani M, Ghosh K, Hoseinifar SH, et al. (2019) Genus Bacillus, promising probiotics in aquaculture: Aquatic animal origin, bio-active components, bioremediation and efficacy in fish and shellfish. Rev Fish Sci Aquac 27: 331-379. https://doi.org/10.1080/23308249.2019.1597010
    [82] Midhun SJ, Neethu S, Vysakh A, et al. (2017) Antibacterial activity and probiotic characterization of autochthonous Paenibacillus polymyxa isolated from Anabas testudineus (Bloch, 1792). Microb Pathog 113: 403-411. https://doi.org/10.1016/j.micpath.2017.11.019
    [83] Kim MJ, Hong JB, Han IS, et al. (2023) Vulnerability assessment of Korean fisheries to climate change. Mar Policy 155: 105735. https://doi.org/10.1016/j.marpol.2023.105735
    [84] Bentzon-Tilia M, Sonnenschein EC, Gram L (2016) Monitoring and managing microbes in aquaculture—Towards a sustainable industry. Microb Biotechnol 9: 576-584. https://doi.org/10.1111/1751-7915.12392
    [85] Nogueira T, Silva DG, Lopes S, et al. (2022) Database of metagenomes of sediments from estuarine aquaculture farms in Portugal—AquaRAM project collection. Data 7: 167. https://doi.org/10.3390/data7110167
    [86] Tran PQ, Bachand SC, McIntyre PB, et al. (2021) Depth-discrete metagenomics reveals the roles of microbes in biogeochemical cycling in the tropical freshwater Lake Tanganyika. ISME J 15: 1971-1986. https://doi.org/10.1038/s41396-021-00898-x
    [87] Zarean M, Dave SH, Brar SK, et al. (2025) Environmental drivers of antibiotic resistance: Synergistic effects of climate change, co-pollutants, and microplastics. J Hazard Mater Adv 19: 100768. https://doi.org/10.1016/j.hazadv.2025.100768
    [88] Kumar VS, Pandey PK, Anand T, et al. (2018) Biofloc improves water, effluent quality and growth parameters of Penaeus vannamei in an intensive culture system. J Environ Manage 215: 206-215. https://doi.org/10.1016/j.jenvman.2018.03.015
    [89] Li S, Liu H, Lin Y, et al. (2026) Biofloc technology improves harmful nitrogen and pathogens control and enhances production performance in intensive Penaeus vannamei culture ponds with reduced water exchange. Fishes 11: 170. https://doi.org/10.3390/fishes11030170
  • Reader Comments
  • © 2026 the Author(s), licensee AIMS Press. This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0)
通讯作者: 陈斌, bchen63@163.com
  • 1. 

    沈阳化工大学材料科学与工程学院 沈阳 110142

  1. 本站搜索
  2. 百度学术搜索
  3. 万方数据库搜索
  4. CNKI搜索
AIMS Microbiology
4.1 4.9

Metrics

Article views(123) PDF downloads(8) Cited by(0)

Preview PDF
Download XML
Export Citation
Article outline

Figures and Tables

Tables(1)

Other Articles By Authors

Related pages

Tools

/

DownLoad:  Full-Size Img  PowerPoint
Return
Return

Catalog