1.
|
Ovidiu Pârvu, David Gilbert, Monika Heiner, Fei Liu, Nigel Saunders, Simon Shaw,
Spatial-Temporal Modelling and Analysis of Bacterial Colonies with Phase Variable Genes,
2015,
25,
1049-3301,
1,
10.1145/2742546
|
|
2.
|
D. Rodriguez, B. Einarsson, A. Carpio,
Biofilm growth on rugose surfaces,
2012,
86,
1539-3755,
10.1103/PhysRevE.86.061914
|
|
3.
|
Séverine Urdy,
On the evolution of morphogenetic models: mechano-chemical interactions and an integrated view of cell differentiation, growth, pattern formation and morphogenesis,
2012,
87,
14647931,
786,
10.1111/j.1469-185X.2012.00221.x
|
|
4.
|
Xing Jin, Jeffrey S. Marshall, Robert Nerenberg,
Mechanics of biofilms formed of bacteria with fimbriae appendages,
2020,
15,
1932-6203,
e0243280,
10.1371/journal.pone.0243280
|
|
5.
|
Bruno Hay Mele, Francesco Giannino, Christian E. Vincenot, Stefano Mazzoleni, Fabrizio Cartení,
Cell-Based Models in Plant Developmental Biology: Insights into Hybrid Approaches,
2015,
3,
2296-665X,
10.3389/fenvs.2015.00073
|
|
6.
|
Pablo Gonzalez-de-Aledo, Andrey Vladimirov, Marco Manca, Jerry Baugh, Ryo Asai, Marcus Kaiser, Roman Bauer,
An optimization approach for agent-based computational models of biological development,
2018,
121,
09659978,
262,
10.1016/j.advengsoft.2018.03.010
|
|
7.
|
Susan D. Hester, Julio M. Belmonte, J. Scott Gens, Sherry G. Clendenon, James A. Glazier, Edmund J. Crampin,
A Multi-cell, Multi-scale Model of Vertebrate Segmentation and Somite Formation,
2011,
7,
1553-7358,
e1002155,
10.1371/journal.pcbi.1002155
|
|
8.
|
C. Giverso, M. Scianna, L. Preziosi, N. Lo Buono, A. Funaro,
Individual Cell-Based Model for In-Vitro Mesothelial Invasion of Ovarian Cancer,
2010,
5,
0973-5348,
203,
10.1051/mmnp/20105109
|
|
9.
|
Marco Scianna, Luca Munaron,
Multiscale model of tumor-derived capillary-like network formation,
2011,
6,
1556-181X,
597,
10.3934/nhm.2011.6.597
|
|
10.
|
Tomas Storck, Cristian Picioreanu, Bernardino Virdis, Damien J. Batstone,
Variable Cell Morphology Approach for Individual-Based Modeling of Microbial Communities,
2014,
106,
00063495,
2037,
10.1016/j.bpj.2014.03.015
|
|
11.
|
Gaddiel Yonathan Ouaknin, Pinhas Zvi Bar-Yoseph,
Stochastic Collective Movement of Cells and Fingering Morphology: No Maverick Cells,
2009,
97,
00063495,
1811,
10.1016/j.bpj.2009.05.064
|
|
12.
|
Maciej H. Swat, Susan D. Hester, Ariel I. Balter, Randy W. Heiland, Benjamin L. Zaitlen, James A. Glazier,
2009,
Chapter 13,
978-1-934115-64-0,
361,
10.1007/978-1-59745-525-1_13
|
|
13.
|
Abbas Shirinifard, James Alexander Glazier, Maciej Swat, J. Scott Gens, Fereydoon Family, Yi Jiang, Hans E. Grossniklaus, Edmund J. Crampin,
Adhesion Failures Determine the Pattern of Choroidal Neovascularization in the Eye: A Computer Simulation Study,
2012,
8,
1553-7358,
e1002440,
10.1371/journal.pcbi.1002440
|
|
14.
|
M. Scianna, L. Preziosi,
Multiscale Developments of the Cellular Potts Model,
2012,
10,
1540-3459,
342,
10.1137/100812951
|
|
15.
|
Z. Huang, E.S. McLamore, H.S. Chuang, W. Zhang, S. Wereley, J.L.C. Leon, M.K. Banks,
Shear-induced detachment of biofilms from hollow fiber silicone membranes,
2013,
110,
00063592,
525,
10.1002/bit.24631
|
|
16.
|
R. Allena, M. Scianna, L. Preziosi,
A Cellular Potts Model of single cell migration in presence of durotaxis,
2016,
275,
00255564,
57,
10.1016/j.mbs.2016.02.011
|
|
17.
|
Nikodem J. Popławski, Ubirajara Agero, J. Scott Gens, Maciej Swat, James A. Glazier, Alexander R. A. Anderson,
Front Instabilities and Invasiveness of Simulated Avascular Tumors,
2009,
71,
0092-8240,
1189,
10.1007/s11538-009-9399-5
|
|
18.
|
Xuefeng Gao, Chwanrow K. Baban, Mark Tangney, Sabin Tabirca,
2011,
Computer simulation of hypoxia regulates avascular tumor growth through p27 expression,
978-1-4244-9323-4,
15,
10.1109/ICCME.2011.5876697
|
|
19.
|
Abbas Shirinifard, J. Scott Gens, Benjamin L. Zaitlen, Nikodem J. Popławski, Maciej Swat, James A. Glazier, Neil A. Hotchin,
3D Multi-Cell Simulation of Tumor Growth and Angiogenesis,
2009,
4,
1932-6203,
e7190,
10.1371/journal.pone.0007190
|
|
20.
|
Marco Scianna,
A Multiscale Hybrid Model for Pro-angiogenic Calcium Signals in a Vascular Endothelial Cell,
2012,
74,
0092-8240,
1253,
10.1007/s11538-011-9695-8
|
|
21.
|
M.V. Sheraton, V.R. Melnikov, P.M.A. Sloot,
Prediction and quantification of bacterial biofilm detachment using Glazier–Graner–Hogeweg method based model simulations,
2019,
482,
00225193,
109994,
10.1016/j.jtbi.2019.109994
|
|
22.
|
Makiko Nonomura, Ying Xu,
Study on Multicellular Systems Using a Phase Field Model,
2012,
7,
1932-6203,
e33501,
10.1371/journal.pone.0033501
|
|
23.
|
R. M. H. Merks, P. Koolwijk,
Modeling Morphogenesisin silicoandin vitro: Towards Quantitative, Predictive, Cell-based Modeling,
2009,
4,
0973-5348,
149,
10.1051/mmnp/20094406
|
|
24.
|
Filippo Castiglione, Emiliano Mancini, Marco Pedicini, Abdul Salam Jarrah,
2019,
9780128114322,
874,
10.1016/B978-0-12-809633-8.20454-8
|
|
25.
|
M. V. Sheraton, J. K. H. Yam, C. H. Tan, H. S. Oh, E. Mancini, L. Yang, S. A. Rice, P. M. A. Sloot,
Mesoscopic Energy Minimization Drives
Pseudomonas aeruginosa
Biofilm Morphologies and Consequent Stratification of Antibiotic Activity Based on Cell Metabolism
,
2018,
62,
0066-4804,
10.1128/AAC.02544-17
|
|
26.
|
Marco Scianna, Luca Munaron, Luigi Preziosi,
A multiscale hybrid approach for vasculogenesis and related potential blocking therapies,
2011,
106,
00796107,
450,
10.1016/j.pbiomolbio.2011.01.004
|
|
27.
|
Olaya Rendueles, Jean-Marc Ghigo,
2015,
9781683670919,
319,
10.1128/9781555817466.ch16
|
|
28.
|
M. V. Sheraton, Peter M. A. Sloot,
2018,
Chapter 38,
978-3-319-93697-0,
496,
10.1007/978-3-319-93698-7_38
|
|
29.
|
J.A. Fozard, M. Lees, J.R. King, B.S. Logan,
Inhibition of quorum sensing in a computational biofilm simulation,
2012,
109,
03032647,
105,
10.1016/j.biosystems.2012.02.002
|
|
30.
|
Maciej H. Swat, Gilberto L. Thomas, Julio M. Belmonte, Abbas Shirinifard, Dimitrij Hmeljak, James A. Glazier,
2012,
110,
9780123884039,
325,
10.1016/B978-0-12-388403-9.00013-8
|
|
31.
|
Nikodem J. Poplawski, Abbas Shirinifard, Ubirajara Agero, J. Scott Gens, Maciej Swat, James A. Glazier, Gustavo Stolovitzky,
Front Instabilities and Invasiveness of Simulated 3D Avascular Tumors,
2010,
5,
1932-6203,
e10641,
10.1371/journal.pone.0010641
|
|
32.
|
Vivi Andasari, Ryan T. Roper, Maciej H. Swat, Mark A. J. Chaplain, Soheil S. Dadras,
Integrating Intracellular Dynamics Using CompuCell3D and Bionetsolver: Applications to Multiscale Modelling of Cancer Cell Growth and Invasion,
2012,
7,
1932-6203,
e33726,
10.1371/journal.pone.0033726
|
|
33.
|
Julio M. Belmonte, Sherry G. Clendenon, Guilherme M. Oliveira, Maciej H. Swat, Evan V. Greene, Srividhya Jeyaraman, James A. Glazier, Robert L. Bacallao, Leah Edelstein-Keshet,
Virtual-tissue computer simulations define the roles of cell adhesion and proliferation in the onset of kidney cystic disease,
2016,
27,
1059-1524,
3673,
10.1091/mbc.e16-01-0059
|
|
34.
|
D. R. Espeso, A. Carpio, B. Einarsson,
Differential growth of wrinkled biofilms,
2015,
91,
1539-3755,
10.1103/PhysRevE.91.022710
|
|
35.
|
Olaya Rendueles, Jean-Marc Ghigo, Mahmoud Ghannoum, Matthew Parsek, Marvin Whiteley, Pranab Mukherjee,
Mechanisms of Competition in Biofilm Communities,
2015,
3,
2165-0497,
10.1128/microbiolspec.MB-0009-2014
|
|
36.
|
Hoa Nguyen, Abraham Ybarra, Hakan Başağaoğlu, Orrin Shindell,
Biofilm viscoelasticity and nutrient source location control biofilm growth rate, migration rate, and morphology in shear flow,
2021,
11,
2045-2322,
10.1038/s41598-021-95542-1
|
|
37.
|
Minggao Zheng, Qihua Liu, Yanyi Rao,
UAV Based on Communication Network to Obtain Oil Pipeline Data and 3D Modeling,
2022,
2022,
1875-905X,
1,
10.1155/2022/6860631
|
|
38.
|
Jinfeng Zhang, Yongqiang Tian, Jianglai Wang, Jinxiu Ma, Lu Liu, Rehmat Islam, Yonghong Qi, Jiajia Li, Tong Shen,
Inhibitory effect and possible mechanism of oregano and clove essential oils against Pectobacterium carotovorum subsp. carotovorum as onion soft rot in storage,
2023,
196,
09255214,
112164,
10.1016/j.postharvbio.2022.112164
|
|
39.
|
Andre Then, Jan Ewald, Natalie Söllner, Rebecca E. Cooper, Kirsten Küsel, Bashar Ibrahim, Stefan Schuster,
Agent-based modelling of iron cycling bacteria provides a framework for testing alternative environmental conditions and modes of action,
2022,
9,
2054-5703,
10.1098/rsos.211553
|
|
40.
|
Christian T. Michael, Sayed Ahmad Almohri, Jennifer J. Linderman, Denise E. Kirschner,
A framework for multi-scale intervention modeling: virtual cohorts, virtual clinical trials, and model-to-model comparisons,
2024,
3,
2674-0702,
10.3389/fsysb.2023.1283341
|
|
41.
|
Zhongyu Yan, Jingjie Yeo,
Competing mechanisms in bacterial invasion of human colon mucus probed with agent-based modeling,
2024,
00063495,
10.1016/j.bpj.2024.05.028
|
|
42.
|
Filippo Castiglione, Emiliano Mancini, Marco Pedicini, Abdul S. Jarrah,
2024,
9780128096338,
10.1016/B978-0-323-95502-7.00029-4
|
|
43.
|
Tavishi Dutt, Jimpi Langthasa, Monica Umesh, Satyarthi Mishra, Siddharth Bothra, Kottpalli Vidhipriya, Annapurna Vadaparty, Prosenjit Sen, Ramray Bhat,
Rheological transition driven by matrix makes cancer spheroids resilient under confinement,
2025,
8,
2575-1077,
e202402601,
10.26508/lsa.202402601
|
|
44.
|
Yumeng Fu, Jiankun Wang, Xiaoling Wang,
Simulation of head-tail biofilm streamer growth based on immersed boundary method,
2025,
0892-7014,
1,
10.1080/08927014.2025.2490748
|
|