AIMS Biophysics

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• Morphology and ultrastructure of retrovirus particles

  Wei Zhang, Sheng Cao, Jessica L. Martin, Joachim D. Mueller, Louis M. Mansky

  2015, 2(3): 343-369. doi: 10.3934/biophy.2015.3.343

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• Recent Advances in Cryo-TEM Imaging of Soft Lipid Nanoparticles

  Shen Helvig, Intan D. M. Azmi, Seyed M. Moghimi, Anan Yaghmur

  2015, 2(2): 116-130. doi: 10.3934/biophy.2015.2.116

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• What is the role of histone H1 heterogeneity? A functional model emerges from a 50 year mystery

  Missag Hagop Parseghian

  2015, 2(4): 724-772. doi: 10.3934/biophy.2015.4.724

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• Structural comparison of contractile nanomachines

  Sebastian Kube, Petra Wendler

  2015, 2(2): 88-115. doi: 10.3934/biophy.2015.2.88

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• Fast and accurate conversion of atomic models into electron density maps

  Carlos O.S. Sorzano, Javier Vargas, Joaquín Otón, Vahid Abrishami, José M. de la Rosa-Trevín, Sandra del Riego, Alejandro Fernández-Alderete, Carlos Martínez-Rey, Roberto Marabini, José M. Carazo

  2015, 2(1): 8-20. doi: 10.3934/biophy.2015.1.8

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• The interplay of long non-coding RNAs and MYC in cancer

  Michael J. Hamilton, Matthew D. Young, Silvia Sauer, Ernest Martinez

  2015, 2(4): 794-809. doi: 10.3934/biophy.2015.4.794

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• Re-modeling Chara action potential: I. from Thiel model of Ca²⁺transient to action potential form

  Mary Jane Beilby, Sabah Al Khazaaly

  2016, 3(3): 431-449. doi: 10.3934/biophy.2016.3.431

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• Mechanisms and applications of the anti-inflammatory effects of photobiomodulation

  Michael R Hamblin

  2017, 4(3): 337-361. doi: 10.3934/biophy.2017.3.337

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• Metastable capillary filaments in rectangular cross-section open microchannels

  Jean Berthier, Kenneth A. Brakke, David Gosselin, Maxime Huet, Erwin Berthier

  2014, 1(1): 31-48. doi: 10.3934/biophy.2014.1.31

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• Cellular mechanotransduction

  José Luis Alonso, Wolfgang H. Goldmann

  2016, 3(1): 50-62. doi: 10.3934/biophy.2016.1.50

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• Validation of 3D EM Reconstructions: The Phantom in the Noise

  J Bernard Heymann

  2015, 2(1): 21-35. doi: 10.3934/biophy.2015.1.21

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• Integral membrane pyrophosphatases: a novel drug target for human pathogens?

  Nita R. Shah, Keni Vidilaseris, Henri Xhaard, Adrian Goldman

  2016, 3(1): 171-194. doi: 10.3934/biophy.2016.1.171

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• Propagation of electrotonic potentials in plants: Experimental study and mathematical modeling

  Alexander G. Volkov, Yuri B. Shtessel

  2016, 3(3): 358-379. doi: 10.3934/biophy.2016.3.358

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• Single-particle based helical reconstruction—how to make the most of real and Fourier space

  Carsten Sachse

  2015, 2(2): 219-244. doi: 10.3934/biophy.2015.2.219

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• Cotransport of water and solutes in plant membranes: The molecular basis, and physiological functions

  Lars H. Wegner

  2017, 4(2): 192-209. doi: 10.3934/biophy.2017.2.192

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• Double casting prototyping with a thermal aging step for fabrication of 3D microstructures in poly(dimethylsiloxane)

  Karina Kwapiszewska, Kamil Żukowski, Radosław Kwapiszewski, Zbigniew Brzózka

  2016, 3(4): 553-562. doi: 10.3934/biophy.2016.4.553

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• Chromatin dynamics at DNA breaks: what, how and why?

  Théo Lebeaupin, Hafida Sellou, Gyula Timinszky, and Sébastien Huet

  2015, 2(4): 458-475. doi: 10.3934/biophy.2015.4.458

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• Continuous-flow sorting of microalgae cells based on lipid content by high frequency dielectrophoresis

  Hanieh Hadady, Doug Redelman, Sage R. Hiibel, Emil J. Geiger

  2016, 3(3): 398-414. doi: 10.3934/biophy.2016.3.398

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• Structure and function of histone acetyltransferase MOF

  Qiao Yi Chen, Max Costa, Hong Sun

  2015, 2(4): 555-569. doi: 10.3934/biophy.2015.4.555

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• Topological diversity of chromatin fibers: Interplay between nucleosome repeat length, DNA linking number and the level of transcription

  Davood Norouzi, Ataur Katebi, Feng Cui, Victor B. Zhurkin

  2015, 2(4): 613-629. doi: 10.3934/biophy.2015.4.613

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• Cryo-STEM Tomography of Intact Vitrified Fibroblasts

  David Kirchenbuechler, Yael Mutsafi, Ben Horowitz, Smadar Levin-Zaidman, Deborah Fass, Sharon G. Wolf, Michael Elbaum

  2015, 2(3): 259-273. doi: 10.3934/biophy.2015.3.259

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• Coarse-grained molecular dynamics simulations of biomolecules

  Ken Takahashi, Takayuki Oda, Keiji Naruse

  2014, 1(1): 1-15. doi: 10.3934/biophy.2014.1.1

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• Structure and Assembly of the PI3K-like Protein Kinases (PIKKs) Revealed by Electron Microscopy

  Angel Rivera-Calzada, Andrés López-Perrote, Roberto Melero, Jasminka Boskovic, Hugo Muñoz-Hernández, Fabrizio Martino, Oscar Llorca

  2015, 2(2): 36-57. doi: 10.3934/biophy.2015.2.36

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• Post-translational modifications in neurodegeneration

  Alessandro Didonna, Federico Benetti

  2016, 3(1): 27-49. doi: 10.3934/biophy.2016.1.27

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• Don’t forget the exogenous microbial transglutaminases: it is immunogenic and potentially pathogenic

  Aaron Lerner, Torsten Matthias

  2016, 3(4): 546-552. doi: 10.3934/biophy.2016.4.546

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• Thermal analysis of ligand-DNA interaction: determination of binding parameters

  Ekaterina Bereznyak, Natalia Gladkovskaya, Evgeniy Dukhopelnykov, Anastasiya Gerus, Anastasiya Lantushenko, Maxim Evstigneev

  2015, 2(4): 423-440. doi: 10.3934/biophy.2015.4.423

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• Chromatin epigenomic domain folding: size matters

  Bertrand R. Caré, Pierre-Emmanuel Emeriau, Ruggero Cortini, Jean-Marc Victor

  2015, 2(4): 517-530. doi: 10.3934/biophy.2015.4.517

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• Modelling cell death for cancer hadrontherapy

  Mario P. Carante, Francesca Ballarini

  2017, 4(3): 465-490. doi: 10.3934/biophy.2017.3.465

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• Glycation and secondary conformational changes of human serum albumin: study of the FTIR spectroscopic curve-fitting technique

  Yu-Ting Huang, Hui-Fen Liao, Shun-Li Wang, Shan-Yang Lin

  2016, 3(2): 247-260. doi: 10.3934/biophy.2016.2.247

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• Protein crystallization: Eluding the bottleneck of X-ray crystallography

  Joshua Holcomb, Nicholas Spellmon, Yingxue Zhang, Maysaa Doughan, Chunying Li, Zhe Yang

  2017, 4(4): 557-575. doi: 10.3934/biophy.2017.4.557

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• Mechanosensitive ion channels

  Ken Takahashi, Yusuke Matsuda, Keiji Naruse

  2016, 3(1): 63-74. doi: 10.3934/biophy.2016.1.63

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• Universal buffers for use in biochemistry and biophysical experiments

  Dewey Brooke, Navid Movahed, Brian Bothner

  2015, 2(3): 336-342. doi: 10.3934/biophy.2015.3.336

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• Re-modeling Chara action potential: II. The action potential form under salinity stress

  Mary Jane Beilby, Sabah Al Khazaaly

  2017, 4(2): 298-315. doi: 10.3934/biophy.2017.2.298

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• Novel insights into the function of the conserved domain of the CAP superfamily of proteins

  Nick K. Olrichs, J. Bernd Helms

  2016, 3(2): 232-246. doi: 10.3934/biophy.2016.2.232

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• G protein-coupled receptors: the evolution of structural insight

  Samantha B. Gacasan, Daniel L. Baker, Abby L. Parrill

  2017, 4(3): 491-527. doi: 10.3934/biophy.2017.3.491

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• Identifying and selecting edible luminescent probes as sensors of food quality

  Maria G. Corradini, Yan Lavinia Wang, An Le, Sarah M. Waxman, Bogumil Zelent, Rahul Chib, Ignacy Gryczynski, Richard D. Ludescher

  2016, 3(2): 319-339. doi: 10.3934/biophy.2016.2.319

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• Effects of the Lipophilic Core of Polymer Nanoassemblies on Intracellular Delivery and Transfection of siRNA

  Steven Rheiner, Piotr Rychahou, Younsoo Bae

  2015, 2(3): 284-302. doi: 10.3934/biophy.2015.3.284

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• Viscoelastic capillary flow: the case of whole blood

  David Gosselin, Maxime Huet, Myriam Cubizolles, David Rabaud, Naceur Belgacem, Didier Chaussy, Jean Berthier

  2016, 3(3): 340-357. doi: 10.3934/biophy.2016.3.340

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• Studying epigenetic interactions using MicroScale Thermophoresis (MST)

  Thomas Schubert, Gernot Längst

  2015, 2(3): 370-380. doi: 10.3934/biophy.2015.3.370

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• STIM1 activation is regulated by a 14 amino acid sequence adjacent to the CRAC activation domain

  Marek K. Korzeniowski, Barbara Baird, David Holowka

  2016, 3(1): 99-118. doi: 10.3934/biophy.2016.1.99

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• Regulation of Aquaporin Z osmotic permeability in ABA tri-block copolymer

  Wenyuan Xie, Jason Wei Jun Low, Arunmozhiarasi Armugam, Kandiah Jeyaseelan, Yen Wah Tong

  2015, 2(3): 381-397. doi: 10.3934/biophy.2015.3.381

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• Cytosine methylation in insects: new routes for the comprehension of insect complexity

  Mauro Mandrioli, Gian Carlo Manicardi

  2015, 2(4): 412-422. doi: 10.3934/biophy.2015.4.412

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• Differential responses to salt-induced oxidative stress in three phylogenetically related plant species: Arabidopsis thaliana (glycophyte), Thellungiella salsuginea and Cakile maritima (halophytes). Involvement of ROS and NO in the control of K+/Na+ homeostasis

  Hayet Houmani, Francisco J Corpas

  2016, 3(3): 380-397. doi: 10.3934/biophy.2016.3.380

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• Mathematical methods for modeling the microcirculation

  Julia C. Arciero, Paola Causin, Francesca Malgaroli

  2017, 4(3): 362-399. doi: 10.3934/biophy.2017.3.362

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• Determining complex aggregate distributions of macromolecules using photobleaching image correlation microscopy

  Alireza Lajevardipour, James W. M. Chon, Andrew H. A. Clayton

  2015, 2(1): 1-7. doi: 10.3934/biophy.2015.1.1

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• Plant potassium channels are in general dual affinity uptake systems

  Ingo Dreyer

  2017, 4(1): 90-106. doi: 10.3934/biophy.2017.1.90

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• Into the chromatin world: Role of nuclear architecture in epigenome regulation

  Andrea Bianchi, Chiara Lanzuolo

  2015, 2(4): 585-612. doi: 10.3934/biophy.2015.4.585

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• Quality control mechanisms of protein biogenesis: proteostasis dies hard

  Timothy Jan Bergmann, Giorgia Brambilla Pisoni, Maurizio Molinari

  2016, 3(4): 456-478. doi: 10.3934/biophy.2016.4.456

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• Microtubule modification influences cellular response to amyloid-β exposure

  Nicole Shamitko-Klingensmith, Jonathan W. Boyd, Justin Legleiter

  2016, 3(2): 261-285. doi: 10.3934/biophy.2016.2.261

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• Structure of the cystic fibrosis transmembrane conductance regulator in the inward-facing conformation revealed by single particle electron microscopy

  Ateeq Al-Zahrani, Natasha Cant, Vassilis Kargas, Tracy Rimington, Luba Aleksandrov, John R. Riordan, Robert C. Ford

  2015, 2(2): 131-152. doi: 10.3934/biophy.2015.2.131

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• Lipid-Nucleic Acid Supramolecular Complexes: Lipoplex Structure and the Kinetics of Formation

  Nily Dan

  2015, 2(2): 163-183. doi: 10.3934/biophy.2015.2.163

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• Lipid phase separation in the presence of hydrocarbons in giant unilamellar vesicles

  Rianne Bartelds, Jonathan Barnoud, Arnold J. Boersma, Siewert J. Marrink, Bert Poolman

  2017, 4(4): 528-542. doi: 10.3934/biophy.2017.4.528

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• A guide to investigating colloidal nanoparticles by cryogenic transmission electron microscopy: pitfalls and benefits

  Christophe A. Monnier, David C. Thévenaz, Sandor Balog, Gina L. Fiore, Dimitri Vanhecke, Barbara Rothen-Rutishauser, Alke Petri-Fink

  2015, 2(3): 245-258. doi: 10.3934/biophy.2015.3.245

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• Recent progress in Monte Carlo simulation on gold nanoparticle radiosensitization

  James C. L. Chow

  2018, 5(4): 231-244. doi: 10.3934/biophy.2018.4.231

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• Columnar structure of SV40 minichromosome

  Edward N Trifonov

  2015, 2(3): 274-283. doi: 10.3934/biophy.2015.3.274

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• Electrotonic signal transduction between Aloe vera plants using underground pathways in soil: Experimental and analytical study

  Alexander G. Volkov, Yuri B. Shtessel

  2017, 4(4): 576-595. doi: 10.3934/biophy.2017.4.576

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• Patterning of the MinD cell division protein in cells of arbitrary shape can be predicted using a heuristic dispersion relation

  James C. Walsh, Christopher N. Angstmann, Anna V. McGann, Bruce I. Henry, Iain G. Duggin, Paul M. G. Curmi

  2016, 3(1): 119-145. doi: 10.3934/biophy.2016.1.119

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• Kinetic proofreading of chromatin remodeling: from gene activation to gene repression and back

  Raghvendra P. Singh, Guillaume Brysbaert, Marc F. Lensink, Fabrizio Cleri, Ralf Blossey

  2015, 2(4): 398-411. doi: 10.3934/biophy.2015.4.398

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• Minimizing Pseudomonas aeruginosa adhesion to titanium surfaces by a plasma nitriding process

  Michelle de Medeiros Aires, Janine Treter, Antônio Nunes Filho, Igor Oliveira Nascimento, Alexandre José Macedo, Clodomiro Alves Júnior

  2017, 4(1): 19-32. doi: 10.3934/biophy.2017.1.19

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• SMYD proteins in immunity: dawning of a new era

  Maysaa Doughan, Nicholas Spellmon, Chunying Li, Zhe Yang

  2016, 3(4): 450-455. doi: 10.3934/biophy.2016.4.450

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• Fast and sensitive rigid-body fitting into cryo-EM density maps with PowerFit

  Gydo C.P.van Zundert, Alexandre M.J.J. Bonvin

  2015, 2(2): 73-87. doi: 10.3934/biophy.2015.2.73

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• Protein chainmail variants in dsDNA viruses

  Z. Hong Zhou, Joshua Chiou

  2015, 2(2): 200-218. doi: 10.3934/biophy.2015.2.200

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• Evolutionary analysis of Slc11 mechanism of proton-coupled metal-ion transmembrane import

  Mathieu F. M. Cellier

  2016, 3(2): 286-318. doi: 10.3934/biophy.2016.2.286

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• Influence of cholesterol on human calcitonin channel formation. Possible role of sterol as molecular chaperone

  Daniela Meleleo, Cesare Sblano

  2019, 6(1): 23-38. doi: 10.3934/biophy.2019.1.23

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• Common evolutionary binding mode of rhodopsin-like GPCRs: Insights from structural bioinformatics

  Eda Suku, Alejandro Giorgetti

  2017, 4(4): 543-556. doi: 10.3934/biophy.2017.4.543

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• Cellular ATP release in the lung and airway

  Satoru Ito, Kishio Furuya, Masahiro Sokabe, Yoshinori Hasegawa

  2016, 3(4): 571-584. doi: 10.3934/biophy.2016.4.571

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• New open conformation of SMYD3 implicates conformational selection and allostery

  Nicholas Spellmon, Xiaonan Sun, Wen Xue, Joshua Holcomb, Srinivas Chakravarthy, Weifeng Shang, Brian Edwards, Nualpun Sirinupong, Chunying Li, Zhe Yang

  2017, 4(1): 1-18. doi: 10.3934/biophy.2017.1.1

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• Receptor tyrosine kinase structure and function in health and disease

  Oleg A. Karpov, Gareth W. Fearnley, Gina A. Smith, Jayakanth Kankanala, Michael J. McPherson, Darren C. Tomlinson, Michael A. Harrison, Sreenivasan Ponnambalam

  2015, 2(4): 476-502. doi: 10.3934/biophy.2015.4.476

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• Studies of cholesterol structures in phospholipid bilayers

  Carl S. Helrich

  2017, 4(3): 415-437. doi: 10.3934/biophy.2017.3.415

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• Single cell adhesion strength assessed with variable-angle total internal reflection fluorescence microscopy

  Marcelina Cardoso Dos Santos, Cyrille Vézy, Hamid Morjani, Rodolphe Jaffol

  2017, 4(3): 438-450. doi: 10.3934/biophy.2017.3.438

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• Pilot RNAi screening using mammalian cell-based system identifies novel putative silencing factors including Kat5/Tip60

  Anuroop Venkateswaran Venkatasubramani, Katy McLaughlin, Giovanny Rodriguez Blanco, Vladimir Larionov, Alexander Kagansky

  2015, 2(4): 570-584. doi: 10.3934/biophy.2015.4.570

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• Ultrasonic, photocatalytic and sonophotocatalytic degradation of Basic Red-2 by using Nb₂O₅ nano catalyst

  Vilas K. Mahajan, Sandip P. Patil, Shirish H. Sonawane, Gunvant H. Sonawane

  2016, 3(3): 415-430. doi: 10.3934/biophy.2016.3.415

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• Exploring function of conserved non-coding DNA in its chromosomal context

  Delores J. Grant, Leighcraft A. Shakes, Hope M. Wolf, Derek C. Norford, Pradeep K. Chatterjee

  2015, 2(4): 773-793. doi: 10.3934/biophy.2015.4.773

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• Molecular mechanisms of intestinal inflammation leading to colorectal cancer

  Sonia Shastri, Ravichandra Vemuri, Nuri Gueven, Madhur D. Shastri, Rajaraman Eri

  2017, 4(1): 152-177. doi: 10.3934/biophy.2017.1.152

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• Intrinsic blue-green fluorescence in amyloyd fibrils

  Ivana Sirangelo, Margherita Borriello, Gaetano Irace, Clara Iannuzzi

  2018, 5(2): 155-165. doi: 10.3934/biophy.2018.2.155

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• Microfluidic technology for cell hydrodynamic manipulation

  Stefania Torino, Mario Iodice, Ivo Rendina, Giuseppe Coppola

  2017, 4(2): 178-191. doi: 10.3934/biophy.2017.2.178

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• Physics and the molecular revolution in plant biology: union needed for managing the future

  Ulrich Lüttge

  2016, 3(4): 501-521. doi: 10.3934/biophy.2016.4.501

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• How membrane lipids control the 3D structure and function of receptors

  Jacques Fantini, Francisco J. Barrantes

  2018, 5(1): 22-35. doi: 10.3934/biophy.2018.1.22

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• A machine learning algorithm for identifying and tracking bacteria in three dimensions using Digital Holographic Microscopy

  Manuel Bedrossian, Marwan El-Kholy, Daniel Neamati, Jay Nadeau

  2018, 5(1): 36-49. doi: 10.3934/biophy.2018.1.36

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• RosettaTMH: a method for membrane protein structure elucidation combining EPR distance restraints with assembly of transmembrane helices

  Stephanie H. DeLuca, Samuel L. DeLuca, Andrew Leaver-Fay, Jens Meiler

  2016, 3(1): 1-26. doi: 10.3934/biophy.2016.1.1

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• Possible roles of transglutaminases in molecular mechanisms responsible for human neurodegenerative diseases

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  2016, 3(4): 529-545. doi: 10.3934/biophy.2016.4.529

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  2017, 4(2): 222-239. doi: 10.3934/biophy.2017.2.222

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  2016, 3(4): 563-570. doi: 10.3934/biophy.2016.4.563

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  2016, 3(1): 75-87. doi: 10.3934/biophy.2016.1.75

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  2016, 3(1): 88-98. doi: 10.3934/biophy.2016.1.88

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  2017, 4(4): 596-614. doi: 10.3934/biophy.2017.4.596

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• The effect of different divalent cations on the kinetics and fidelity of Bacillus stearothermophilus DNA polymerase

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  2018, 5(2): 125-143. doi: 10.3934/biophy.2018.2.125

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• Mechanoelectric feedback does not contribute to the Frank-Starling relation in the rat and guinea pig heart

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  2014, 1(1): 16-30. doi: 10.3934/biophy.2014.1.16

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• Cell Surface Receptors in the 21st Century

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  2014, 1(1): 51-52. doi: 10.3934/biophy.2014.1.51

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• Towards a robust algorithm to determine topological domains from colocalization data

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  2015, 2(4): 503-516. doi: 10.3934/biophy.2015.4.503

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• Effect of different divalent cations on the kinetics and fidelity of DNA polymerases

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  2018, 5(4): 272-289. doi: 10.3934/biophy.2018.4.272

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  2016, 3(2): 211-231. doi: 10.3934/biophy.2016.2.211

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• Chromatin—a global buffer for eukaryotic gene control

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  2015, 2(4): 531-554. doi: 10.3934/biophy.2015.4.531

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