Communication

Draft genome sequences of Enterococcus durans EDD2 strain associated with honeybees

  • Received: 22 April 2020 Accepted: 19 June 2020 Published: 23 June 2020
  • We report the annotated draft genome sequence of Enterococcus durans EDD2 strain isolated from freshly collected pollen granules derived from three different beehives. This isolate showed strong inhibitory activity in vitro against Paenibacillus larvae ATCC 9545; thus the genome sequence presented here will contribute to a better understanding of its protective potential against bacterial pathogen invasion, as well as to the assessment of its beneficial potential for the bee colonies.

    Citation: Slavil Peykov, Antoniya Vladimirova, Anita Guyrova, Martin Dimitrov, Tanya Strateva, Svetoslav G. Dimov. Draft genome sequences of Enterococcus durans EDD2 strain associated with honeybees[J]. AIMS Agriculture and Food, 2020, 5(2): 288-291. doi: 10.3934/agrfood.2020.2.288

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  • We report the annotated draft genome sequence of Enterococcus durans EDD2 strain isolated from freshly collected pollen granules derived from three different beehives. This isolate showed strong inhibitory activity in vitro against Paenibacillus larvae ATCC 9545; thus the genome sequence presented here will contribute to a better understanding of its protective potential against bacterial pathogen invasion, as well as to the assessment of its beneficial potential for the bee colonies.



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    [1] Genersch E (2010) American Foulbrood in honeybees and its causative agent, Paenibacillus larvae. J Invertebr Pathol 103: S10-19. doi: 10.1016/j.jip.2009.06.015
    [2] Byappanahalli MN, Nevers MB, Korajkic A, et al. (2012) Enterococci in the environment. Microbiol Mol Biol R 76: 685-706. doi: 10.1128/MMBR.00023-12
    [3] Carina Audisio M, Torres MJ, Sabate DC, et al. (2011) Properties of different lactic acid bacteria isolated from Apis mellifera L. bee-gut. Microbiol Res 166: 1-13. doi: 10.1016/j.micres.2010.01.003
    [4] Afgan E, Baker D, Batut B, et al. (2018) The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update. Nucleic Acids Res 46: W537-W544. doi: 10.1093/nar/gky379
    [5] Andrews S (2010) FastQC: A quality control tool for high throughput sequence data.
    [6] Bolger AM, Lohse M, Usadel B (2014) Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30: 2114-2120. doi: 10.1093/bioinformatics/btu170
    [7] Seemann T (2017) Shovill: Faster SPAdes assembly of Illumina reads.
    [8] Gurevich A, Saveliev V, Vyahhi N, et al. (2013) QUAST: quality assessment tool for genome assemblies. Bioinformatics 29: 1072-1075. doi: 10.1093/bioinformatics/btt086
    [9] Darling AC, Mau B, Blattner FR, et al. (2004) Mauve: multiple alignment of conserved genomic sequence with rearrangements. Genome Res 14: 1394-1403. doi: 10.1101/gr.2289704
    [10] Liu F, Li B, Du J, et al. (2016) Complete genome sequence of Enterococcus durans KLDS6.0930, a strain with probiotic properties. J Biotechnol 217: 49-50.
    [11] Rodriguez RL, Gunturu S, Harvey WT, et al. (2018) The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level. Nucleic Acids Res 46: W282-W288. doi: 10.1093/nar/gky467
    [12] Tatusova T, DiCuccio M, Badretdin A, et al. (2016) NCBI prokaryotic genome annotation pipeline. Nucleic Acids Res 44: 6614-6624. doi: 10.1093/nar/gkw569
    [13] Carattoli A, Zankari E, Garcia-Fernandez A, et al. (2014) In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing. Antimicrob Agents Chemother 58: 3895-3903. doi: 10.1128/AAC.02412-14
    [14] Kirschner C, Maquelin K, Pina P, et al. (2001) Classification and identification of enterococci: a comparative phenotypic, genotypic, and vibrational spectroscopic study. J Clin Microbiol 39: 1763-1770. doi: 10.1128/JCM.39.5.1763-1770.2001
    [15] Clausen P, Aarestrup FM, Lund O (2018) Rapid and precise alignment of raw reads against redundant databases with KMA. BMC Bioinformatics 19: 307. doi: 10.1186/s12859-018-2336-6
    [16] van Heel AJ, de Jong A, Song C, et al. (2018) BAGEL4: a user-friendly web server to thoroughly mine RiPPs and bacteriocins. Nucleic Acids Res 46: W278-W281. doi: 10.1093/nar/gky383
    [17] Janashia I, Carminati D, Rossetti L, et al. (2016) Characterization of fructophilic lactic microbiota of Apis mellifera from the Caucasus Mountains. Ann Microbiol 66: 1387-1395. doi: 10.1007/s13213-016-1226-2
    [18] Janashia I, Choiset Y, Rabesona H, et al. (2016) Protection of honeybee Apis mellifera by its endogenous and exogenous lactic flora against bacterial infections. Ann Agrar Sci 14: 177-181. doi: 10.1016/j.aasci.2016.07.002
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