Citation: Dane Patey, Nikolai Mushkinov, Grant Bowman, Rongsong Liu. Mathematical modeling of population structure in bioreactors seeded with light-controllable microbial stem cells[J]. Mathematical Biosciences and Engineering, 2020, 17(6): 8182-8201. doi: 10.3934/mbe.2020415
[1] | L. Sanchez-Garcia, L. Martín, R. Mangues, N. Ferrer-Miralles, E. Vázquez, A. Villaverde, Recombinant pharmaceuticals from microbial cells: a 2015 update, Microb. Cell Fact., 15 (2016), 33. doi: 10.1186/s12934-016-0437-3 |
[2] | S.-F. Yuan, H. S. Alper, Metabolic engineering of microbial cell factories for production of nutraceuticals, Microb. Cell Fact., 18 (2019), 46. doi: 10.1186/s12934-019-1096-y |
[3] | N. Mokashe, B. Chaudhari, U. Patil, Operative utility of salt-stable proteases of halophilic and halotolerant bacteria in the biotechnology sector, Int. J. Biol. Macromol., 117 (2018), 493-522. doi: 10.1016/j.ijbiomac.2018.05.217 |
[4] | F. Hasan, A. A. Shah, S. Javed, A. Hameed, Enzymes used in detergents: Lipases, Afr. J. Biotechnol., 9 (2010), 4836-4844. |
[5] | W. Xu, X. Ma, Y. Wang, Production of squalene by microbes: an update, World J. Microb. Biot., 32 (2016), 195. doi: 10.1007/s11274-016-2155-8 |
[6] | C. Zhao, Y. Zhang, Y. Li, Production of fuels and chemicals from renewable resources using engineered escherichia coli, Biotechnol. Adv., 37 (2019), 107402. doi: 10.1016/j.biotechadv.2019.06.001 |
[7] | G.-Q. Chen, X.-R. Jiang, Engineering bacteria for enhanced polyhydroxyalkanoates (pha) biosynthesis, Synth. Syst. Biotechnol., 2 (2017), 192-197. doi: 10.1016/j.synbio.2017.09.001 |
[8] | O. Borkowski, F. Ceroni, G.-B. Stan, T. Ellis, Overloaded and stressed: whole-cell considerations for bacterial synthetic biology, Curr. Opin. Microbiol., 33 (2016), 123-130. doi: 10.1016/j.mib.2016.07.009 |
[9] | J. Nielsen, J. D. Keasling, Engineering cellular metabolism, Cell, 164 (2016), 1185-1197. doi: 10.1016/j.cell.2016.02.004 |
[10] | K. W. George, M. G. Thompson, J. Kim, E. E. K. Baidoo, G. Wang, V. T. Benites, et al., Integrated analysis of isopentenyl pyrophosphate (ipp) toxicity in isoprenoid-producing escherichia coli, Metab. Eng. Commun., 47 (2018), 60-72. doi: 10.1016/j.ymben.2018.03.004 |
[11] | H. Zeng, A. Yang, Quantification of proteomic and metabolic burdens predicts growth retardation and overflow metabolism in recombinant escherichia coli, Biotechnol. Bioeng., 116 (2019), 1484-1495. doi: 10.1002/bit.26943 |
[12] | A. Mukhopadhyay, Tolerance engineering in bacteria for the production of advanced biofuels and chemicals, Trends Microbiol., 23 (2015), 498-508. doi: 10.1016/j.tim.2015.04.008 |
[13] | P. Rugbjerg, N. M.-Petersen, A. Porse, K. S.-Lytzen, M. O. A. Sommer, Diverse genetic error modes constrain large-scale bio-based production, Nat. Commun., 9 (2018), 787. doi: 10.1038/s41467-018-03232-w |
[14] | F. Moser, N. J. Broers, S. Hartmans, A. Tamsir, R. Kerkman, J. A. Roubos, et al., Genetic circuit performance under conditions relevant for industrial bioreactors, ACS Synth. Biol., 1 (2012), 555-564. doi: 10.1021/sb3000832 |
[15] | H. R. Thieme, Mathematics in population biology, volume 12. Princeton University Press, 2018. |
[16] | J. D. Murray, Mathematical biology: I. An introduction, volume 17. Springer Science & Business Media, 2007. |
[17] | A. Hastings, Population biology: concepts and models, Springer Science & Business Media, 2013. |
[18] | N. Bellomo, M. Delitala, From the mathematical kinetic, and stochastic game theory to modelling mutations, onset, progression and immune competition of cancer cells, Phys. Life Rev., 5 (2008), 183-206. doi: 10.1016/j.plrev.2008.07.001 |
[19] | J. L. Bautista, C.-W. J. Lio, S. K. Lathrop, K. Forbush, Y. Liang, J. Luo, et al., Intraclonal competition limits the fate determination of regulatory t cells in the thymus, Nat. Immunol., 10 (2009), 610-617. doi: 10.1038/ni.1739 |
[20] | N. Bellomo, A. Bellouquid, M. Delitala, Mathematical topics on the modelling complex multicellular systems and tumor immune cells competition, Math. Models Methods Appl. Sci., 14 (2004), 1683-1733. doi: 10.1142/S0218202504003799 |
[21] | N. V. Mushnikov, A. Fomicheva, M. Gomelsky, G. R. Bowman, Inducible asymmetric cell division and cell differentiation in a bacterium, Nat. Chem. Biol., 15 (2019), 925-931. doi: 10.1038/s41589-019-0340-4 |
[22] | W. B. Schofield, H. C. Lim, C. Jacobs-Wagner, Cell cycle coordination and regulation of bacterial chromosome segregation dynamics by polarly localized proteins, EMBO J., 29 (2010), 3068-3081. doi: 10.1038/emboj.2010.207 |