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2015 Volume 2, Issue 4

Review
Kinetic proofreading of chromatin remodeling: from gene activation to gene repression and back
Raghvendra P Singh,  Guillaume Brysbaert,  Marc F Lensink,  Fabrizio Cleri,  Ralf Blossey
2015, Volume 2, Issue 4: 398-411. doi: 10.3934/biophy.2015.4.398
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Review
Cytosine methylation in insects: new routes for the comprehension of insect complexity
Mauro Mandrioli,  Gian Carlo Manicardi
2015, Volume 2, Issue 4: 412-422. doi: 10.3934/biophy.2015.4.412
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Review
Thermal analysis of ligand-DNA interaction: determination of binding parameters
Ekaterina Bereznyak,  Natalia Gladkovskaya,  Evgeniy Dukhopelnykov,  Anastasiya Gerus,  Anastasiya Lantushenko,  Maxim Evstigneev
2015, Volume 2, Issue 4: 423-440. doi: 10.3934/biophy.2015.4.423
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Review
Possible pathophysiological roles of transglutaminase-catalyzed reactions in the pathogenesis of human neurodegenerative diseases
Enrica Serretiello,  Martina Iannaccone,  Federica Titta,  Nicola G. Gatta,  Vittorio Gentile
2015, Volume 2, Issue 4: 441-457. doi: 10.3934/biophy.2015.4.441
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Review
Chromatin dynamics at DNA breaks: what, how and why?
Théo Lebeaupin,  Hafida Sellou,  Gyula Timinszky,  Sébastien Huet
2015, Volume 2, Issue 4: 458-475. doi: 10.3934/biophy.2015.4.458
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Review
Receptor tyrosine kinase structure and function in health and disease
Oleg A. Karpov,  Gareth W. Fearnley,  Gina A. Smith,  Jayakanth Kankanala,  Michael J. McPherson,  Darren C. Tomlinson,  Michael A. Harrison,  Sreenivasan Ponnambalam
2015, Volume 2, Issue 4: 476-502. doi: 10.3934/biophy.2015.4.476
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Research article
Towards a robust algorithm to determine topological domains from colocalization data
Alexander P. Moscalets,  Leonid I. Nazarov,  Mikhail V. Tamm
2015, Volume 2, Issue 4: 503-516. doi: 10.3934/biophy.2015.4.503
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Research article
Chromatin epigenomic domain folding: size matters
Bertrand R. Caré,  Pierre-Emmanuel Emeriau,  Ruggero Cortini,  Jean-Marc Victor
2015, Volume 2, Issue 4: 517-530. doi: 10.3934/biophy.2015.4.517
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Review
Chromatin—a global buffer for eukaryotic gene control
Yuri M. Moshkin
2015, Volume 2, Issue 4: 531-554. doi: 10.3934/biophy.2015.4.531
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Review
Structure and function of histone acetyltransferase MOF
Qiao Yi Chen,  Max Costa,  Hong Sun
2015, Volume 2, Issue 4: 555-569. doi: 10.3934/biophy.2015.4.555
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Research article
Pilot RNAi screening using mammalian cell-based system identifies novel putative silencing factors including Kat5/Tip60
Anuroop Venkateswaran Venkatasubramani,  Katy McLaughlin,  Giovanny Rodriguez Blanco,  Vladimir Larionov,  Alexander Kagansky
2015, Volume 2, Issue 4: 570-584. doi: 10.3934/biophy.2015.4.570
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Review
Into the chromatin world: Role of nuclear architecture in epigenome regulation
Andrea Bianchi,  Chiara Lanzuolo
2015, Volume 2, Issue 4: 585-612. doi: 10.3934/biophy.2015.4.585
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Research article
Topological diversity of chromatin fibers: Interplay between nucleosome repeat length, DNA linking number and the level of transcription
Davood Norouzi,  Ataur Katebi,  Feng Cui,  Victor B. Zhurkin
2015, Volume 2, Issue 4: 613-629. doi: 10.3934/biophy.2015.4.613
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Research article
A survey of conformational and energetic changes in G protein signaling
Alyssa D. Lokits,  Julia Koehler Leman,  Kristina E. Kitko,  Nathan S. Alexander,  Heidi E. Hamm,  Jens Meiler
2015, Volume 2, Issue 4: 630-648. doi: 10.3934/biophy.2015.4.630
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Review
Reversible peptide oligomerization over nanoscale gold surfaces
Kazushige Yokoyama,  Christa D. Catalfamo,  Minxuan Yuan
2015, Volume 2, Issue 4: 649-665. doi: 10.3934/biophy.2015.4.649
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Research article
Chiral selection in wrapping, crossover, and braiding of DNA mediated by asymmetric bend-writhe elasticity
Tomohiro Yanao,  Sosuke Sano,  Kenichi Yoshikawa
2015, Volume 2, Issue 4: 666-694. doi: 10.3934/biophy.2015.4.666
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Review
Salmon calcitonin: conformational changes and stabilizer effects
Shan-Yang Lin
2015, Volume 2, Issue 4: 695-723. doi: 10.3934/biophy.2015.4.695
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Review
What is the role of histone H1 heterogeneity? A functional model emerges from a 50 year mystery
Missag Hagop Parseghian
2015, Volume 2, Issue 4: 724-772. doi: 10.3934/biophy.2015.4.724
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Review
Exploring function of conserved non-coding DNA in its chromosomal context
Delores J. Grant,  Leighcraft A. Shakes,  Hope M. Wolf,  Derek C. Norford,  Pradeep K. Chatterjee
2015, Volume 2, Issue 4: 773-793. doi: 10.3934/biophy.2015.4.773
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Review
The interplay of long non-coding RNAs and MYC in cancer
Michael J. Hamilton,  Matthew D. Young,  Silvia Sauer,  Ernest Martinez
2015, Volume 2, Issue 4: 794-809. doi: 10.3934/biophy.2015.4.794
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